Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC16.91■□□□□ 0.3
SKA3Q8IX90 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SKA3Q8IX90 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
SKA3Q8IX90 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SKA3Q8IX90 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SKA3Q8IX90 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
SKA3Q8IX90 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC16.9■□□□□ 0.3
SKA3Q8IX90 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SKA3Q8IX90 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.9■□□□□ 0.3
SKA3Q8IX90 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC16.9■□□□□ 0.3
SKA3Q8IX90 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SKA3Q8IX90 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC16.9■□□□□ 0.3
SKA3Q8IX90 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC16.9■□□□□ 0.3
SKA3Q8IX90 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SKA3Q8IX90 RPS2P55-201ENST00000397318 883 ntBASIC16.9■□□□□ 0.3
SKA3Q8IX90 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC16.9■□□□□ 0.3
SKA3Q8IX90 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC16.9■□□□□ 0.3
SKA3Q8IX90 AC107956.1-201ENST00000494359 873 ntBASIC16.9■□□□□ 0.3
SKA3Q8IX90 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC16.9■□□□□ 0.3
SKA3Q8IX90 RPS15-203ENST00000586096 570 ntTSL 2 BASIC16.9■□□□□ 0.3
SKA3Q8IX90 AC073195.1-201ENST00000607241 877 ntBASIC16.9■□□□□ 0.3
SKA3Q8IX90 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC16.9■□□□□ 0.3
SKA3Q8IX90 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
SKA3Q8IX90 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SKA3Q8IX90 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SKA3Q8IX90 PRRC2A-201ENST00000376007 6861 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SKA3Q8IX90 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
SKA3Q8IX90 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SKA3Q8IX90 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC16.9■□□□□ 0.3
SKA3Q8IX90 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC16.9■□□□□ 0.3
SKA3Q8IX90 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SKA3Q8IX90 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SKA3Q8IX90 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SKA3Q8IX90 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SKA3Q8IX90 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SKA3Q8IX90 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC16.89■□□□□ 0.29
SKA3Q8IX90 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
SKA3Q8IX90 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SKA3Q8IX90 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SKA3Q8IX90 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SKA3Q8IX90 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SKA3Q8IX90 SAPCD2P4-201ENST00000424595 1171 ntBASIC16.89■□□□□ 0.29
SKA3Q8IX90 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC16.89■□□□□ 0.29
SKA3Q8IX90 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SKA3Q8IX90 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SKA3Q8IX90 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC16.89■□□□□ 0.29
SKA3Q8IX90 Z99916.2-201ENST00000604037 246 ntBASIC16.89■□□□□ 0.29
SKA3Q8IX90 CR392000.1-201ENST00000624770 1228 ntBASIC16.89■□□□□ 0.29
SKA3Q8IX90 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC16.89■□□□□ 0.29
SKA3Q8IX90 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
SKA3Q8IX90 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
SKA3Q8IX90 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SKA3Q8IX90 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC16.89■□□□□ 0.29
SKA3Q8IX90 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SKA3Q8IX90 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SKA3Q8IX90 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SKA3Q8IX90 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
SKA3Q8IX90 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SKA3Q8IX90 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.29
SKA3Q8IX90 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SKA3Q8IX90 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC16.89■□□□□ 0.29
SKA3Q8IX90 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC16.89■□□□□ 0.29
SKA3Q8IX90 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC16.89■□□□□ 0.29
SKA3Q8IX90 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SKA3Q8IX90 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC16.88■□□□□ 0.29
SKA3Q8IX90 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SKA3Q8IX90 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC16.88■□□□□ 0.29
SKA3Q8IX90 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SKA3Q8IX90 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SKA3Q8IX90 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SKA3Q8IX90 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SKA3Q8IX90 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SKA3Q8IX90 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC16.88■□□□□ 0.29
SKA3Q8IX90 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC16.88■□□□□ 0.29
SKA3Q8IX90 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SKA3Q8IX90 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC16.88■□□□□ 0.29
SKA3Q8IX90 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC16.88■□□□□ 0.29
SKA3Q8IX90 AC131212.4-201ENST00000623606 975 ntBASIC16.88■□□□□ 0.29
SKA3Q8IX90 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SKA3Q8IX90 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SKA3Q8IX90 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC16.88■□□□□ 0.29
SKA3Q8IX90 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
SKA3Q8IX90 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
SKA3Q8IX90 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
SKA3Q8IX90 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC16.88■□□□□ 0.29
SKA3Q8IX90 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
SKA3Q8IX90 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SKA3Q8IX90 KRT16P1-201ENST00000399124 1418 ntBASIC16.87■□□□□ 0.29
SKA3Q8IX90 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SKA3Q8IX90 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
SKA3Q8IX90 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SKA3Q8IX90 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
SKA3Q8IX90 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SKA3Q8IX90 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SKA3Q8IX90 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC16.87■□□□□ 0.29
SKA3Q8IX90 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
SKA3Q8IX90 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC16.87■□□□□ 0.29
SKA3Q8IX90 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
SKA3Q8IX90 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
SKA3Q8IX90 FAM197Y1-201ENST00000421178 764 ntBASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 30.3 ms