Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 AC020763.4-201ENST00000623414 4170 ntBASIC18.31■□□□□ 0.52
PPP4R4Q6NUP7 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 AP001271.2-201ENST00000624018 1556 ntBASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 NOC2LP1-202ENST00000452600 2235 ntBASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 MPV17L-201ENST00000287594 5820 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC18.3■□□□□ 0.52
PPP4R4Q6NUP7 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 WIZP1-201ENST00000531444 2299 ntBASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 AL354751.1-201ENST00000412768 1863 ntBASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 GCK-205ENST00000437084 1385 ntTSL 5 BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PPP4R4Q6NUP7 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 AL031598.1-201ENST00000561511 1773 ntBASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 CD99P1-205ENST00000527459 561 ntBASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PPP4R4Q6NUP7 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms