Protein–RNA interactions for Protein: Q5VTB9

RNF220, E3 ubiquitin-protein ligase RNF220, humanhuman

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220Q5VTB9 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF220Q5VTB9 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF220Q5VTB9 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF220Q5VTB9 KRT16P6-202ENST00000425692 1426 ntBASIC18.38■□□□□ 0.53
RNF220Q5VTB9 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
RNF220Q5VTB9 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
RNF220Q5VTB9 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
RNF220Q5VTB9 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
RNF220Q5VTB9 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.38■□□□□ 0.53
RNF220Q5VTB9 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
RNF220Q5VTB9 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 GLI3-203ENST00000437480 451 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 C2orf69P4-201ENST00000565394 541 ntBASIC18.37■□□□□ 0.53
RNF220Q5VTB9 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 AC084018.2-201ENST00000613093 2607 ntBASIC18.37■□□□□ 0.53
RNF220Q5VTB9 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 KRT17P1-201ENST00000399211 1546 ntBASIC18.37■□□□□ 0.53
RNF220Q5VTB9 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
RNF220Q5VTB9 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 AC023632.3-201ENST00000521633 145 ntBASIC18.36■□□□□ 0.53
RNF220Q5VTB9 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.36■□□□□ 0.53
RNF220Q5VTB9 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 IKBKGP1-201ENST00000612193 1073 ntBASIC18.36■□□□□ 0.53
RNF220Q5VTB9 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RNF220Q5VTB9 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 HLA-G-202ENST00000376815 851 ntBASIC18.35■□□□□ 0.53
RNF220Q5VTB9 HLA-G-203ENST00000376818 1127 ntBASIC18.35■□□□□ 0.53
RNF220Q5VTB9 CDCA4P2-201ENST00000441182 718 ntBASIC18.35■□□□□ 0.53
RNF220Q5VTB9 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 AL137784.2-201ENST00000607332 1000 ntBASIC18.35■□□□□ 0.53
RNF220Q5VTB9 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.35■□□□□ 0.53
RNF220Q5VTB9 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF220Q5VTB9 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms