Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LSM3P62310 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LSM3P62310 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
LSM3P62310 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM3P62310 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM3P62310 PHGDH-210ENST00000641115 1638 ntBASIC17.23■□□□□ 0.35
LSM3P62310 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC17.23■□□□□ 0.35
LSM3P62310 RPP21-222ENST00000433076 577 ntTSL 2 BASIC17.23■□□□□ 0.35
LSM3P62310 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM3P62310 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.23■□□□□ 0.35
LSM3P62310 AL031963.3-201ENST00000606441 850 ntBASIC17.23■□□□□ 0.35
LSM3P62310 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LSM3P62310 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC17.23■□□□□ 0.35
LSM3P62310 AL358852.1-201ENST00000623174 1268 ntBASIC17.23■□□□□ 0.35
LSM3P62310 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.23■□□□□ 0.35
LSM3P62310 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM3P62310 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LSM3P62310 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC17.23■□□□□ 0.35
LSM3P62310 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.23■□□□□ 0.35
LSM3P62310 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM3P62310 ESPNP-201ENST00000270691 2015 ntBASIC17.23■□□□□ 0.35
LSM3P62310 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
LSM3P62310 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.23■□□□□ 0.35
LSM3P62310 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM3P62310 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LSM3P62310 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
LSM3P62310 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM3P62310 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
LSM3P62310 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LSM3P62310 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LSM3P62310 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LSM3P62310 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
LSM3P62310 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LSM3P62310 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LSM3P62310 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
LSM3P62310 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LSM3P62310 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LSM3P62310 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.22■□□□□ 0.35
LSM3P62310 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LSM3P62310 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
LSM3P62310 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC17.22■□□□□ 0.35
LSM3P62310 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LSM3P62310 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.22■□□□□ 0.35
LSM3P62310 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LSM3P62310 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
LSM3P62310 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
LSM3P62310 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
LSM3P62310 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
LSM3P62310 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LSM3P62310 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 IRX1P1-201ENST00000438849 1838 ntBASIC17.21■□□□□ 0.35
LSM3P62310 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
LSM3P62310 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LSM3P62310 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.21■□□□□ 0.35
LSM3P62310 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC17.21■□□□□ 0.35
LSM3P62310 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.21■□□□□ 0.35
LSM3P62310 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC17.21■□□□□ 0.35
LSM3P62310 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LSM3P62310 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.21■□□□□ 0.35
LSM3P62310 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.21■□□□□ 0.35
LSM3P62310 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC17.21■□□□□ 0.35
LSM3P62310 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
LSM3P62310 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.21■□□□□ 0.35
LSM3P62310 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
LSM3P62310 KRT8P20-201ENST00000423953 1409 ntBASIC17.21■□□□□ 0.34
LSM3P62310 AC087633.2-202ENST00000565166 1439 ntBASIC17.21■□□□□ 0.34
LSM3P62310 MPST-204ENST00000404393 1329 ntTSL 5 BASIC17.21■□□□□ 0.34
LSM3P62310 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC17.2■□□□□ 0.34
LSM3P62310 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LSM3P62310 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LSM3P62310 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LSM3P62310 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC17.2■□□□□ 0.34
LSM3P62310 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC17.2■□□□□ 0.34
LSM3P62310 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
LSM3P62310 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.2■□□□□ 0.34
LSM3P62310 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LSM3P62310 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LSM3P62310 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.2■□□□□ 0.34
LSM3P62310 MIR572-201ENST00000384983 95 ntBASIC17.2■□□□□ 0.34
LSM3P62310 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
LSM3P62310 SAPCD2P1-201ENST00000395413 1184 ntBASIC17.2■□□□□ 0.34
LSM3P62310 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms