Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX2P48431 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC16.82■□□□□ 0.28
SOX2P48431 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX2P48431 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SOX2P48431 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SOX2P48431 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC16.82■□□□□ 0.28
SOX2P48431 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
SOX2P48431 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
SOX2P48431 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX2P48431 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SOX2P48431 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX2P48431 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX2P48431 MFF-205ENST00000354503 1085 ntTSL 2 BASIC16.82■□□□□ 0.28
SOX2P48431 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SOX2P48431 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SOX2P48431 PRODH-215ENST00000610940 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX2P48431 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.82■□□□□ 0.28
SOX2P48431 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.82■□□□□ 0.28
SOX2P48431 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX2P48431 LETM1P2-201ENST00000597330 2178 ntBASIC16.82■□□□□ 0.28
SOX2P48431 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX2P48431 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SOX2P48431 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX2P48431 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC16.82■□□□□ 0.28
SOX2P48431 IRX1P1-201ENST00000438849 1838 ntBASIC16.82■□□□□ 0.28
SOX2P48431 AC124283.5-201ENST00000624661 1809 ntBASIC16.82■□□□□ 0.28
SOX2P48431 OR6D1P-202ENST00000641007 5290 ntBASIC16.82■□□□□ 0.28
SOX2P48431 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SOX2P48431 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SOX2P48431 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 AL390961.4-201ENST00000623958 2535 ntBASIC16.81■□□□□ 0.28
SOX2P48431 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.81■□□□□ 0.28
SOX2P48431 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SOX2P48431 ZNF446-203ENST00000594369 2238 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC16.81■□□□□ 0.28
SOX2P48431 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.81■□□□□ 0.28
SOX2P48431 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.81■□□□□ 0.28
SOX2P48431 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC16.81■□□□□ 0.28
SOX2P48431 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 AC004911.1-201ENST00000416316 871 ntBASIC16.81■□□□□ 0.28
SOX2P48431 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC16.81■□□□□ 0.28
SOX2P48431 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC16.81■□□□□ 0.28
SOX2P48431 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC16.81■□□□□ 0.28
SOX2P48431 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SOX2P48431 AC104417.2-201ENST00000562989 1793 ntBASIC16.81■□□□□ 0.28
SOX2P48431 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC16.81■□□□□ 0.28
SOX2P48431 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC16.81■□□□□ 0.28
SOX2P48431 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SOX2P48431 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC16.8■□□□□ 0.28
SOX2P48431 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX2P48431 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX2P48431 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
SOX2P48431 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX2P48431 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SOX2P48431 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
SOX2P48431 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC16.8■□□□□ 0.28
SOX2P48431 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX2P48431 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC16.8■□□□□ 0.28
SOX2P48431 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX2P48431 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX2P48431 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SOX2P48431 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC16.8■□□□□ 0.28
SOX2P48431 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SOX2P48431 SERPINH1P1-201ENST00000419794 1249 ntBASIC16.8■□□□□ 0.28
SOX2P48431 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC16.8■□□□□ 0.28
SOX2P48431 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX2P48431 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC16.8■□□□□ 0.28
SOX2P48431 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX2P48431 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX2P48431 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX2P48431 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX2P48431 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX2P48431 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC16.8■□□□□ 0.28
SOX2P48431 MKRN4P-201ENST00000444706 1521 ntBASIC16.8■□□□□ 0.28
SOX2P48431 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SOX2P48431 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX2P48431 Z98044.1-201ENST00000632503 1764 ntBASIC16.79■□□□□ 0.28
SOX2P48431 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
SOX2P48431 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SOX2P48431 WNT6-201ENST00000233948 1703 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SOX2P48431 CRK-204ENST00000574295 1391 ntTSL 5 BASIC16.79■□□□□ 0.28
SOX2P48431 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms