Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDX1P47902 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDX1P47902 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDX1P47902 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
CDX1P47902 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC15.56■□□□□ 0.08
CDX1P47902 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDX1P47902 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDX1P47902 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDX1P47902 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDX1P47902 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDX1P47902 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDX1P47902 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC15.56■□□□□ 0.08
CDX1P47902 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
CDX1P47902 AL158047.1-201ENST00000445918 881 ntBASIC15.56■□□□□ 0.08
CDX1P47902 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC15.56■□□□□ 0.08
CDX1P47902 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
CDX1P47902 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDX1P47902 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC15.56■□□□□ 0.08
CDX1P47902 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDX1P47902 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
CDX1P47902 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC15.56■□□□□ 0.08
CDX1P47902 AC066615.1-201ENST00000640911 628 ntBASIC15.56■□□□□ 0.08
CDX1P47902 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC15.56■□□□□ 0.08
CDX1P47902 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDX1P47902 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDX1P47902 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC15.56■□□□□ 0.08
CDX1P47902 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC15.56■□□□□ 0.08
CDX1P47902 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC15.56■□□□□ 0.08
CDX1P47902 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC15.56■□□□□ 0.08
CDX1P47902 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC15.56■□□□□ 0.08
CDX1P47902 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDX1P47902 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC15.56■□□□□ 0.08
CDX1P47902 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDX1P47902 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.56■□□□□ 0.08
CDX1P47902 TNRC18P3-201ENST00000441896 2691 ntBASIC15.56■□□□□ 0.08
CDX1P47902 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
CDX1P47902 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
CDX1P47902 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
CDX1P47902 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDX1P47902 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC15.55■□□□□ 0.08
CDX1P47902 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDX1P47902 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC15.55■□□□□ 0.08
CDX1P47902 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
CDX1P47902 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDX1P47902 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC15.55■□□□□ 0.08
CDX1P47902 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDX1P47902 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDX1P47902 BAALC-201ENST00000297574 801 ntTSL 3 BASIC15.55■□□□□ 0.08
CDX1P47902 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC15.55■□□□□ 0.08
CDX1P47902 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDX1P47902 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDX1P47902 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC15.55■□□□□ 0.08
CDX1P47902 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
CDX1P47902 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC15.55■□□□□ 0.08
CDX1P47902 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
CDX1P47902 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC15.55■□□□□ 0.08
CDX1P47902 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC15.55■□□□□ 0.08
CDX1P47902 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC15.55■□□□□ 0.08
CDX1P47902 MAX-217ENST00000557277 728 ntTSL 3 BASIC15.55■□□□□ 0.08
CDX1P47902 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC15.55■□□□□ 0.08
CDX1P47902 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC15.55■□□□□ 0.08
CDX1P47902 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDX1P47902 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDX1P47902 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDX1P47902 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC15.55■□□□□ 0.08
CDX1P47902 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC15.55■□□□□ 0.08
CDX1P47902 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDX1P47902 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDX1P47902 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
CDX1P47902 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CDX1P47902 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CDX1P47902 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CDX1P47902 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CDX1P47902 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
CDX1P47902 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC15.54■□□□□ 0.08
CDX1P47902 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
CDX1P47902 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CDX1P47902 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC15.54■□□□□ 0.08
CDX1P47902 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC15.54■□□□□ 0.08
CDX1P47902 AC135050.7-201ENST00000624508 2218 ntBASIC15.54■□□□□ 0.08
CDX1P47902 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC15.54■□□□□ 0.08
CDX1P47902 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC15.54■□□□□ 0.08
CDX1P47902 UBE2SP1-201ENST00000450587 669 ntBASIC15.54■□□□□ 0.08
CDX1P47902 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC15.54■□□□□ 0.08
CDX1P47902 RPS2P52-201ENST00000469610 820 ntBASIC15.54■□□□□ 0.08
CDX1P47902 RPPH1-201ENST00000516869 333 ntBASIC15.54■□□□□ 0.08
CDX1P47902 C1QBPP2-201ENST00000528754 825 ntBASIC15.54■□□□□ 0.08
CDX1P47902 RNF121-214ENST00000533380 870 ntTSL 3 BASIC15.54■□□□□ 0.08
CDX1P47902 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC15.54■□□□□ 0.08
CDX1P47902 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC15.54■□□□□ 0.08
CDX1P47902 AL359736.2-201ENST00000621992 437 ntBASIC15.54■□□□□ 0.08
CDX1P47902 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
CDX1P47902 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CDX1P47902 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC15.54■□□□□ 0.08
CDX1P47902 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CDX1P47902 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
CDX1P47902 NOC2LP2-201ENST00000407594 1944 ntBASIC15.54■□□□□ 0.08
CDX1P47902 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC15.54■□□□□ 0.08
CDX1P47902 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
CDX1P47902 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms