Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX2-1P43699 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX2-1P43699 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NKX2-1P43699 ADRA1A-201ENST00000276393 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX2-1P43699 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX2-1P43699 AP000997.3-201ENST00000623333 2250 ntBASIC15.65■□□□□ 0.1
NKX2-1P43699 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX2-1P43699 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC15.65■□□□□ 0.1
NKX2-1P43699 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
NKX2-1P43699 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC15.65■□□□□ 0.1
NKX2-1P43699 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC15.65■□□□□ 0.1
NKX2-1P43699 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX2-1P43699 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX2-1P43699 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
NKX2-1P43699 AC007322.4-201ENST00000509611 723 ntBASIC15.65■□□□□ 0.1
NKX2-1P43699 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC15.65■□□□□ 0.1
NKX2-1P43699 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NKX2-1P43699 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX2-1P43699 RAB43-208ENST00000615093 783 ntTSL 5 BASIC15.65■□□□□ 0.1
NKX2-1P43699 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC15.65■□□□□ 0.1
NKX2-1P43699 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NKX2-1P43699 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
NKX2-1P43699 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NKX2-1P43699 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC15.65■□□□□ 0.1
NKX2-1P43699 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX2-1P43699 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX2-1P43699 MRPS7-204ENST00000579761 1717 ntTSL 2 BASIC15.65■□□□□ 0.1
NKX2-1P43699 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NKX2-1P43699 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
NKX2-1P43699 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC15.65■□□□□ 0.1
NKX2-1P43699 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX2-1P43699 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
NKX2-1P43699 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
NKX2-1P43699 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC15.64■□□□□ 0.09
NKX2-1P43699 TXNRD3-203ENST00000524230 2950 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC15.64■□□□□ 0.09
NKX2-1P43699 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC15.64■□□□□ 0.09
NKX2-1P43699 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
NKX2-1P43699 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
NKX2-1P43699 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC15.64■□□□□ 0.09
NKX2-1P43699 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
NKX2-1P43699 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 BRI3-207ENST00000539286 699 ntTSL 2 BASIC15.64■□□□□ 0.09
NKX2-1P43699 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 GALNS-213ENST00000569433 723 ntTSL 3 BASIC15.64■□□□□ 0.09
NKX2-1P43699 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC15.64■□□□□ 0.09
NKX2-1P43699 AC013268.1-206ENST00000638368 961 ntBASIC15.64■□□□□ 0.09
NKX2-1P43699 AC112229.1-201ENST00000639295 961 ntBASIC15.64■□□□□ 0.09
NKX2-1P43699 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC15.64■□□□□ 0.09
NKX2-1P43699 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
NKX2-1P43699 PDLIM3-201ENST00000284767 2589 ntTSL 5 BASIC15.64■□□□□ 0.09
NKX2-1P43699 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC15.64■□□□□ 0.09
NKX2-1P43699 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
NKX2-1P43699 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
NKX2-1P43699 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
NKX2-1P43699 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 SDC2-202ENST00000518385 1583 ntTSL 5 BASIC15.63■□□□□ 0.09
NKX2-1P43699 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC15.63■□□□□ 0.09
NKX2-1P43699 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC15.63■□□□□ 0.09
NKX2-1P43699 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
NKX2-1P43699 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC15.63■□□□□ 0.09
NKX2-1P43699 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 RARRES2P4-201ENST00000514074 484 ntBASIC15.63■□□□□ 0.09
NKX2-1P43699 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC15.63■□□□□ 0.09
NKX2-1P43699 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
NKX2-1P43699 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
NKX2-1P43699 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms