Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SMARCA1P28370 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC21.96■■□□□ 1.11
SMARCA1P28370 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC21.96■■□□□ 1.11
SMARCA1P28370 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
SMARCA1P28370 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC21.96■■□□□ 1.11
SMARCA1P28370 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SMARCA1P28370 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SMARCA1P28370 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SMARCA1P28370 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC21.96■■□□□ 1.11
SMARCA1P28370 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC21.96■■□□□ 1.11
SMARCA1P28370 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.96■■□□□ 1.11
SMARCA1P28370 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC21.96■■□□□ 1.11
SMARCA1P28370 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.11
SMARCA1P28370 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.95■■□□□ 1.11
SMARCA1P28370 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
SMARCA1P28370 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC21.95■■□□□ 1.1
SMARCA1P28370 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.95■■□□□ 1.1
SMARCA1P28370 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
SMARCA1P28370 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
SMARCA1P28370 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC21.95■■□□□ 1.1
SMARCA1P28370 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
SMARCA1P28370 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC21.95■■□□□ 1.1
SMARCA1P28370 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC21.95■■□□□ 1.1
SMARCA1P28370 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC21.95■■□□□ 1.1
SMARCA1P28370 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC21.95■■□□□ 1.1
SMARCA1P28370 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
SMARCA1P28370 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC21.95■■□□□ 1.1
SMARCA1P28370 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC21.95■■□□□ 1.1
SMARCA1P28370 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SMARCA1P28370 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.95■■□□□ 1.1
SMARCA1P28370 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SMARCA1P28370 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SMARCA1P28370 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SMARCA1P28370 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SMARCA1P28370 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SMARCA1P28370 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMARCA1P28370 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMARCA1P28370 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC21.94■■□□□ 1.1
SMARCA1P28370 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMARCA1P28370 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.94■■□□□ 1.1
SMARCA1P28370 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC21.94■■□□□ 1.1
SMARCA1P28370 INGX-201ENST00000359239 846 ntBASIC21.94■■□□□ 1.1
SMARCA1P28370 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SMARCA1P28370 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC21.94■■□□□ 1.1
SMARCA1P28370 GXYLT1P6-201ENST00000456472 1187 ntBASIC21.94■■□□□ 1.1
SMARCA1P28370 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.94■■□□□ 1.1
SMARCA1P28370 DUT-205ENST00000558813 769 ntTSL 2 BASIC21.94■■□□□ 1.1
SMARCA1P28370 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SMARCA1P28370 FAM87A-204ENST00000613235 858 ntBASIC21.94■■□□□ 1.1
SMARCA1P28370 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMARCA1P28370 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
SMARCA1P28370 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMARCA1P28370 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC21.94■■□□□ 1.1
SMARCA1P28370 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMARCA1P28370 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMARCA1P28370 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SMARCA1P28370 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
SMARCA1P28370 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SMARCA1P28370 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SMARCA1P28370 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
SMARCA1P28370 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC21.93■■□□□ 1.1
SMARCA1P28370 ECEL1P3-201ENST00000427961 737 ntBASIC21.93■■□□□ 1.1
SMARCA1P28370 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC21.93■■□□□ 1.1
SMARCA1P28370 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC21.93■■□□□ 1.1
SMARCA1P28370 TMA16-209ENST00000513272 803 ntTSL 2 BASIC21.93■■□□□ 1.1
SMARCA1P28370 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC21.93■■□□□ 1.1
SMARCA1P28370 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC21.93■■□□□ 1.1
SMARCA1P28370 TBC1D3P2-202ENST00000577902 1649 ntBASIC21.93■■□□□ 1.1
SMARCA1P28370 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC21.93■■□□□ 1.1
SMARCA1P28370 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC21.93■■□□□ 1.1
SMARCA1P28370 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SMARCA1P28370 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC21.93■■□□□ 1.1
SMARCA1P28370 CLN6-221ENST00000637494 765 ntTSL 5 BASIC21.93■■□□□ 1.1
SMARCA1P28370 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMARCA1P28370 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMARCA1P28370 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMARCA1P28370 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
SMARCA1P28370 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
SMARCA1P28370 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC21.92■■□□□ 1.1
SMARCA1P28370 HMGA1P5-201ENST00000412453 271 ntBASIC21.92■■□□□ 1.1
SMARCA1P28370 AP003041.3-201ENST00000527151 707 ntBASIC21.92■■□□□ 1.1
SMARCA1P28370 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SMARCA1P28370 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC21.92■■□□□ 1.1
SMARCA1P28370 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
SMARCA1P28370 AC008622.2-201ENST00000617006 1229 ntBASIC21.92■■□□□ 1.1
SMARCA1P28370 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC21.92■■□□□ 1.1
SMARCA1P28370 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMARCA1P28370 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMARCA1P28370 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
SMARCA1P28370 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SMARCA1P28370 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SMARCA1P28370 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMARCA1P28370 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SMARCA1P28370 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMARCA1P28370 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
SMARCA1P28370 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMARCA1P28370 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
SMARCA1P28370 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
SMARCA1P28370 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC21.91■■□□□ 1.1
SMARCA1P28370 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC21.91■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms