Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 AC073592.3-201ENST00000625118 1834 ntBASIC14.37□□□□□ -0.11
HLA-DQA1P01909 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 AC133561.4-201ENST00000566112 224 ntBASIC14.37□□□□□ -0.11
HLA-DQA1P01909 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 AC124067.4-201ENST00000519691 2379 ntBASIC14.36□□□□□ -0.11
HLA-DQA1P01909 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 AC120498.10-201ENST00000621827 505 ntBASIC14.36□□□□□ -0.11
HLA-DQA1P01909 FER1L4-210ENST00000615531 5998 ntBASIC14.36□□□□□ -0.11
HLA-DQA1P01909 EML3-212ENST00000494176 2901 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 EML3-216ENST00000529309 2909 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 LINC00896-202ENST00000609602 2128 ntBASIC14.36□□□□□ -0.11
HLA-DQA1P01909 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
HLA-DQA1P01909 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 EBPL-204ENST00000378272 766 ntTSL 3 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 MIR638-201ENST00000385237 100 ntBASIC14.35□□□□□ -0.11
HLA-DQA1P01909 LHPP-203ENST00000392757 840 ntTSL 3 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC14.35□□□□□ -0.11
HLA-DQA1P01909 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms