Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 KDM8-207ENST00000564961 1075 ntTSL 1 (best)12.45□□□□□ -0.423e-6■■■■■ 137.9
SF3B1O75533 SERP1-203ENST00000479209 3934 ntAPPRIS P1 TSL 2 BASIC12.44□□□□□ -0.423e-6■■■■■ 137.9
SF3B1O75533 GGCX-202ENST00000421496 540 ntTSL 412.44□□□□□ -0.423e-6■■■■■ 137.9
SF3B1O75533 POLR3C-201ENST00000334163 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.44□□□□□ -0.423e-6■■■■■ 137.9
SF3B1O75533 METTL16-205ENST00000571669 5606 ntTSL 512.44□□□□□ -0.423e-6■■■■■ 137.9
SF3B1O75533 ELMO2-204ENST00000396391 3574 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.423e-6■■■■■ 137.9
SF3B1O75533 NOP58-205ENST00000472050 582 ntTSL 312.43□□□□□ -0.423e-6■■■■■ 137.9
SF3B1O75533 MIR497HG-201ENST00000443997 770 ntTSL 3 BASIC12.43□□□□□ -0.423e-6■■■■■ 137.9
SF3B1O75533 NBR1-202ENST00000542611 2703 ntTSL 2 BASIC12.43□□□□□ -0.423e-6■■■■■ 137.9
SF3B1O75533 DHDDS-211ENST00000487944 717 ntTSL 212.42□□□□□ -0.423e-6■■■■■ 137.9
SF3B1O75533 LPIN3-201ENST00000373257 4363 ntAPPRIS ALT2 TSL 5 BASIC12.41□□□□□ -0.423e-6■■■■■ 137.9
SF3B1O75533 OSBP2-203ENST00000403222 3728 ntTSL 5 BASIC12.4□□□□□ -0.423e-6■■■■■ 137.9
SF3B1O75533 EXTL3-212ENST00000522725 548 ntTSL 412.39□□□□□ -0.433e-6■■■■■ 137.9
SF3B1O75533 CTC1-206ENST00000579066 514 ntTSL 312.39□□□□□ -0.432e-11■■■■■ 137.9
SF3B1O75533 JMJD7-PLA2G4B-206ENST00000491746 7227 ntTSL 212.39□□□□□ -0.435e-6■■■■■ 137.9
SF3B1O75533 VARS2-205ENST00000469358 3429 ntTSL 512.39□□□□□ -0.435e-6■■■■■ 137.9
SF3B1O75533 OSBP2-214ENST00000454145 589 ntTSL 412.38□□□□□ -0.433e-6■■■■■ 137.9
SF3B1O75533 PNPLA7-201ENST00000277531 4581 ntAPPRIS P3 TSL 2 BASIC12.38□□□□□ -0.433e-6■■■■■ 137.9
SF3B1O75533 FNBP4-210ENST00000531394 605 ntTSL 312.37□□□□□ -0.433e-6■■■■■ 137.9
SF3B1O75533 ADNP-203ENST00000396029 6261 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.433e-6■■■■■ 137.9
SF3B1O75533 ZBTB20-212ENST00000474710 2757 ntTSL 1 (best) BASIC12.36□□□□□ -0.433e-6■■■■■ 137.9
SF3B1O75533 JMJD7-PLA2G4B-201ENST00000342159 2966 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.435e-6■■■■■ 137.9
SF3B1O75533 LARP4-205ENST00000517559 559 ntTSL 412.36□□□□□ -0.433e-6■■■■■ 137.9
SF3B1O75533 RASGRP4-208ENST00000587753 3011 ntTSL 1 (best) BASIC12.34□□□□□ -0.433e-6■■■■■ 137.9
SF3B1O75533 TMEM94-229ENST00000583795 557 ntTSL 412.34□□□□□ -0.432e-11■■■■■ 137.9
SF3B1O75533 DCLRE1C-210ENST00000378289 3532 ntTSL 1 (best) BASIC12.34□□□□□ -0.433e-6■■■■■ 137.9
SF3B1O75533 LMBR1L-227ENST00000552577 2083 ntTSL 212.32□□□□□ -0.443e-6■■■■■ 137.9
SF3B1O75533 REC8-211ENST00000619284 1096 ntTSL 212.32□□□□□ -0.443e-6■■■■■ 137.9
SF3B1O75533 JMJD7-PLA2G4B-202ENST00000382448 3331 ntAPPRIS P3 TSL 2 BASIC12.31□□□□□ -0.445e-6■■■■■ 137.9
SF3B1O75533 AC007389.1-201ENST00000606978 1117 ntTSL 5 BASIC12.3□□□□□ -0.443e-6■■■■■ 137.9
SF3B1O75533 VRK3-223ENST00000601341 1777 ntAPPRIS ALT2 TSL 2 BASIC12.28□□□□□ -0.443e-6■■■■■ 137.9
SF3B1O75533 DIAPH2-203ENST00000373049 3730 ntAPPRIS ALT2 TSL 1 (best) BASIC12.28□□□□□ -0.443e-6■■■■■ 137.9
SF3B1O75533 PLAUR-202ENST00000339082 1254 ntTSL 1 (best) BASIC12.27□□□□□ -0.453e-6■■■■■ 137.9
SF3B1O75533 GDI2-202ENST00000380181 1408 ntTSL 1 (best) BASIC12.26□□□□□ -0.453e-6■■■■■ 137.9
SF3B1O75533 CLUH-206ENST00000572129 480 ntTSL 512.26□□□□□ -0.453e-6■■■■■ 137.9
SF3B1O75533 PELP1-210ENST00000573506 415 ntTSL 212.25□□□□□ -0.452e-11■■■■■ 137.9
SF3B1O75533 SERP1-206ENST00000490945 1596 ntTSL 1 (best)12.25□□□□□ -0.453e-6■■■■■ 137.9
SF3B1O75533 ZNF687-206ENST00000449313 4185 ntTSL 512.25□□□□□ -0.453e-6■■■■■ 137.9
SF3B1O75533 COL20A1-201ENST00000358894 4172 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.453e-6■■■■■ 137.9
SF3B1O75533 NOP58-204ENST00000467734 638 ntTSL 512.23□□□□□ -0.453e-6■■■■■ 137.9
SF3B1O75533 SLC26A2-201ENST00000286298 8080 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.453e-6■■■■■ 137.9
SF3B1O75533 ZNF678-203ENST00000440339 798 ntTSL 212.2□□□□□ -0.463e-6■■■■■ 137.9
SF3B1O75533 ZNF142-205ENST00000449707 5909 ntAPPRIS P1 TSL 1 (best) BASIC12.2□□□□□ -0.463e-6■■■■■ 137.9
SF3B1O75533 DBNL-204ENST00000432854 9618 ntTSL 512.2□□□□□ -0.463e-6■■■■■ 137.9
SF3B1O75533 ADGRD1-213ENST00000543617 1182 ntTSL 1 (best) BASIC12.19□□□□□ -0.463e-6■■■■■ 137.9
SF3B1O75533 HAUS7-204ENST00000437046 543 ntTSL 212.18□□□□□ -0.463e-6■■■■■ 137.9
SF3B1O75533 CAMTA2-201ENST00000348066 4491 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.473e-6■■■■■ 137.9
SF3B1O75533 EBAG9-201ENST00000337573 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.472e-8■■■■■ 137.9
SF3B1O75533 CCNDBP1-214ENST00000568936 2088 ntTSL 212.14□□□□□ -0.472e-11■■■■■ 137.9
SF3B1O75533 AC090004.1-202ENST00000601399 787 ntTSL 512.14□□□□□ -0.473e-6■■■■■ 137.9
SF3B1O75533 TRAPPC4-211ENST00000533012 817 ntTSL 212.12□□□□□ -0.473e-6■■■■■ 137.9
SF3B1O75533 CRELD1-211ENST00000491527 360 ntTSL 212.12□□□□□ -0.473e-6■■■■■ 137.9
SF3B1O75533 VRK3-210ENST00000596121 983 ntTSL 312.11□□□□□ -0.473e-6■■■■■ 137.9
SF3B1O75533 EXTL2-207ENST00000535414 3146 ntTSL 5 BASIC12.11□□□□□ -0.473e-6■■■■■ 137.9
SF3B1O75533 AACS-207ENST00000537477 429 ntTSL 312.11□□□□□ -0.473e-6■■■■■ 137.9
SF3B1O75533 SPDL1-201ENST00000265295 2668 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.473e-6■■■■■ 137.9
SF3B1O75533 ZNF814-203ENST00000594629 570 ntTSL 512.1□□□□□ -0.473e-6■■■■■ 137.9
SF3B1O75533 AACS-208ENST00000537564 573 ntTSL 412.1□□□□□ -0.473e-6■■■■■ 137.9
SF3B1O75533 RNF144A-207ENST00000480970 583 ntTSL 312.1□□□□□ -0.473e-6■■■■■ 137.9
SF3B1O75533 OSBPL3-208ENST00000409863 3490 ntTSL 1 (best)12.09□□□□□ -0.473e-6■■■■■ 137.9
SF3B1O75533 KDM8-201ENST00000286096 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.473e-6■■■■■ 137.9
SF3B1O75533 TUBGCP2-201ENST00000252936 3885 ntAPPRIS P1 TSL 2 BASIC12.07□□□□□ -0.483e-6■■■■■ 137.9
SF3B1O75533 FAM92A-206ENST00000518322 4241 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.483e-6■■■■■ 137.9
SF3B1O75533 MIATNB-203ENST00000435162 760 ntTSL 212.06□□□□□ -0.483e-6■■■■■ 137.9
SF3B1O75533 CDADC1-203ENST00000466868 677 ntTSL 1 (best)12.06□□□□□ -0.483e-6■■■■■ 137.9
SF3B1O75533 LIMK2-202ENST00000333611 3462 ntAPPRIS ALT1 TSL 1 (best) BASIC12.06□□□□□ -0.483e-6■■■■■ 137.9
SF3B1O75533 ZNF57-203ENST00000523428 1774 ntTSL 2 BASIC12.05□□□□□ -0.483e-6■■■■■ 137.9
SF3B1O75533 MAP3K3-208ENST00000579585 3352 ntTSL 1 (best) BASIC12.05□□□□□ -0.482e-6■■■■■ 137.9
SF3B1O75533 GLA-207ENST00000493905 1358 ntTSL 512.05□□□□□ -0.483e-6■■■■■ 137.9
SF3B1O75533 CAMTA2-202ENST00000361571 4777 ntTSL 1 (best) BASIC12.04□□□□□ -0.483e-6■■■■■ 137.9
SF3B1O75533 OSBP2-205ENST00000424224 861 ntTSL 312.04□□□□□ -0.483e-6■■■■■ 137.9
SF3B1O75533 EHD2-201ENST00000263277 3585 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.483e-6■■■■■ 137.9
SF3B1O75533 ZNF814-209ENST00000597342 648 ntTSL 3 BASIC12.03□□□□□ -0.483e-6■■■■■ 137.9
SF3B1O75533 PROCA1-204ENST00000439862 1137 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.483e-6■■■■■ 137.9
SF3B1O75533 AP4M1-211ENST00000446007 960 ntTSL 312.02□□□□□ -0.493e-6■■■■■ 137.9
SF3B1O75533 HGSNAT-210ENST00000524016 757 ntTSL 412□□□□□ -0.493e-6■■■■■ 137.9
SF3B1O75533 TGS1-201ENST00000260129 3782 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.493e-6■■■■■ 137.9
SF3B1O75533 RASGRP4-201ENST00000293062 2926 ntTSL 1 (best) BASIC11.98□□□□□ -0.493e-6■■■■■ 137.9
SF3B1O75533 RASGRP4-215ENST00000614135 2942 ntTSL 5 BASIC11.98□□□□□ -0.493e-6■■■■■ 137.9
SF3B1O75533 RASGRP4-203ENST00000433821 2941 ntTSL 1 (best) BASIC11.98□□□□□ -0.493e-6■■■■■ 137.9
SF3B1O75533 RASGRP4-218ENST00000617966 2927 ntTSL 5 BASIC11.98□□□□□ -0.493e-6■■■■■ 137.9
SF3B1O75533 TPCN1-210ENST00000547955 609 ntTSL 511.97□□□□□ -0.493e-6■■■■■ 137.9
SF3B1O75533 AC040977.2-201ENST00000572547 498 ntTSL 3 BASIC11.96□□□□□ -0.493e-6■■■■■ 137.9
SF3B1O75533 PER3-202ENST00000377532 6279 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.53e-6■■■■■ 137.9
SF3B1O75533 CAMTA2-212ENST00000574951 4431 ntTSL 511.94□□□□□ -0.53e-6■■■■■ 137.9
SF3B1O75533 HGSNAT-201ENST00000379644 5236 ntAPPRIS P1 TSL 2 BASIC11.93□□□□□ -0.53e-6■■■■■ 137.9
SF3B1O75533 CHIC1-202ENST00000373504 6797 ntTSL 1 (best) BASIC11.93□□□□□ -0.53e-6■■■■■ 137.9
SF3B1O75533 TUBGCP2-208ENST00000482278 3553 ntTSL 211.92□□□□□ -0.53e-6■■■■■ 137.9
SF3B1O75533 HACL1-210ENST00000460907 565 ntTSL 211.91□□□□□ -0.53e-6■■■■■ 137.9
SF3B1O75533 AL133372.2-202ENST00000549360 768 ntTSL 3 BASIC11.89□□□□□ -0.513e-6■■■■■ 137.9
SF3B1O75533 EHMT2-207ENST00000463484 547 ntTSL 411.89□□□□□ -0.513e-6■■■■■ 137.9
SF3B1O75533 DNAJC7-213ENST00000589576 586 ntTSL 311.88□□□□□ -0.513e-6■■■■■ 137.9
SF3B1O75533 ZNF433-203ENST00000419886 2322 ntTSL 1 (best) BASIC11.88□□□□□ -0.513e-6■■■■■ 137.9
SF3B1O75533 CAMTA2-208ENST00000572543 4496 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.513e-6■■■■■ 137.9
SF3B1O75533 WDR33-204ENST00000409658 3104 ntTSL 1 (best) BASIC11.85□□□□□ -0.513e-6■■■■■ 137.9
SF3B1O75533 SLC35B1-208ENST00000507477 2487 ntTSL 211.85□□□□□ -0.513e-6■■■■■ 137.9
SF3B1O75533 BTBD9-201ENST00000314100 8486 ntTSL 1 (best) BASIC11.85□□□□□ -0.513e-6■■■■■ 137.9
SF3B1O75533 OSBPL3-207ENST00000409759 3219 ntTSL 511.84□□□□□ -0.513e-6■■■■■ 137.9
SF3B1O75533 SHF-203ENST00000558294 604 ntAPPRIS ALT2 TSL 211.84□□□□□ -0.513e-6■■■■■ 137.9
SF3B1O75533 CHN2-212ENST00000433720 546 ntTSL 311.84□□□□□ -0.513e-6■■■■■ 137.9
Retrieved 100 of 46,956 protein–RNA pairs in 1344.4 ms