Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC24.07■■□□□ 1.44
NPHP1O15259 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC24.07■■□□□ 1.44
NPHP1O15259 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC24.07■■□□□ 1.44
NPHP1O15259 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC24.07■■□□□ 1.44
NPHP1O15259 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC24.07■■□□□ 1.44
NPHP1O15259 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
NPHP1O15259 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
NPHP1O15259 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
NPHP1O15259 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC24.07■■□□□ 1.44
NPHP1O15259 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC24.07■■□□□ 1.44
NPHP1O15259 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC24.07■■□□□ 1.44
NPHP1O15259 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
NPHP1O15259 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
NPHP1O15259 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
NPHP1O15259 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
NPHP1O15259 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
NPHP1O15259 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC24.06■■□□□ 1.44
NPHP1O15259 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
NPHP1O15259 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC24.06■■□□□ 1.44
NPHP1O15259 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
NPHP1O15259 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
NPHP1O15259 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC24.06■■□□□ 1.44
NPHP1O15259 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC24.06■■□□□ 1.44
NPHP1O15259 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC24.06■■□□□ 1.44
NPHP1O15259 AC083849.1-201ENST00000615227 514 ntBASIC24.06■■□□□ 1.44
NPHP1O15259 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
NPHP1O15259 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
NPHP1O15259 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC24.06■■□□□ 1.44
NPHP1O15259 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
NPHP1O15259 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC24.06■■□□□ 1.44
NPHP1O15259 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
NPHP1O15259 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
NPHP1O15259 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC24.06■■□□□ 1.44
NPHP1O15259 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC24.06■■□□□ 1.44
NPHP1O15259 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC24.05■■□□□ 1.44
NPHP1O15259 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC24.05■■□□□ 1.44
NPHP1O15259 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC24.05■■□□□ 1.44
NPHP1O15259 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
NPHP1O15259 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
NPHP1O15259 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC24.05■■□□□ 1.44
NPHP1O15259 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
NPHP1O15259 BUB3-202ENST00000368859 667 ntTSL 3 BASIC24.05■■□□□ 1.44
NPHP1O15259 STARP1-201ENST00000397973 869 ntBASIC24.05■■□□□ 1.44
NPHP1O15259 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC24.05■■□□□ 1.44
NPHP1O15259 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC24.05■■□□□ 1.44
NPHP1O15259 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC24.05■■□□□ 1.44
NPHP1O15259 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC24.05■■□□□ 1.44
NPHP1O15259 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
NPHP1O15259 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC24.05■■□□□ 1.44
NPHP1O15259 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
NPHP1O15259 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC24.05■■□□□ 1.44
NPHP1O15259 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
NPHP1O15259 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
NPHP1O15259 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC24.05■■□□□ 1.44
NPHP1O15259 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP1O15259 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP1O15259 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
NPHP1O15259 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP1O15259 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP1O15259 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC24.04■■□□□ 1.44
NPHP1O15259 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC24.04■■□□□ 1.44
NPHP1O15259 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC24.04■■□□□ 1.44
NPHP1O15259 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC24.04■■□□□ 1.44
NPHP1O15259 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC24.04■■□□□ 1.44
NPHP1O15259 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC24.04■■□□□ 1.44
NPHP1O15259 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC24.04■■□□□ 1.44
NPHP1O15259 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC24.04■■□□□ 1.44
NPHP1O15259 DFFB-212ENST00000625756 649 ntTSL 5 BASIC24.04■■□□□ 1.44
NPHP1O15259 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP1O15259 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC24.04■■□□□ 1.44
NPHP1O15259 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
NPHP1O15259 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP1O15259 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
NPHP1O15259 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
NPHP1O15259 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC24.03■■□□□ 1.44
NPHP1O15259 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC24.03■■□□□ 1.44
NPHP1O15259 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP1O15259 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP1O15259 GAD2-202ENST00000376248 680 ntTSL 5 BASIC24.03■■□□□ 1.44
NPHP1O15259 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP1O15259 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC24.03■■□□□ 1.44
NPHP1O15259 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC24.03■■□□□ 1.44
NPHP1O15259 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP1O15259 FGF14-AS2-201ENST00000606448 1074 ntBASIC24.03■■□□□ 1.44
NPHP1O15259 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC24.03■■□□□ 1.44
NPHP1O15259 AC012313.10-201ENST00000623509 926 ntBASIC24.03■■□□□ 1.44
NPHP1O15259 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC24.03■■□□□ 1.44
NPHP1O15259 AC020907.5-201ENST00000624372 1936 ntBASIC24.03■■□□□ 1.44
NPHP1O15259 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC24.03■■□□□ 1.44
NPHP1O15259 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC24.03■■□□□ 1.44
NPHP1O15259 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP1O15259 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP1O15259 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC24.03■■□□□ 1.44
NPHP1O15259 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
NPHP1O15259 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC24.02■■□□□ 1.44
NPHP1O15259 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP1O15259 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP1O15259 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC24.02■■□□□ 1.44
NPHP1O15259 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
NPHP1O15259 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC24.02■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms