Protein–RNA interactions for Protein: Q9NTX5

ECHDC1, Ethylmalonyl-CoA decarboxylase, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1Q9NTX5 DUX4L13-201ENST00000554103 1267 ntBASIC31.15■■■□□ 2.58
ECHDC1Q9NTX5 DUX4L15-201ENST00000611059 1267 ntBASIC31.15■■■□□ 2.58
ECHDC1Q9NTX5 DUX4L23-201ENST00000615195 1269 ntBASIC31.15■■■□□ 2.58
ECHDC1Q9NTX5 DUX4L24-201ENST00000617576 1269 ntBASIC31.15■■■□□ 2.58
ECHDC1Q9NTX5 DUX4L22-201ENST00000618238 1269 ntBASIC31.15■■■□□ 2.58
ECHDC1Q9NTX5 DUX4L20-201ENST00000619712 1269 ntBASIC31.15■■■□□ 2.58
ECHDC1Q9NTX5 DUX4L21-201ENST00000622058 1269 ntBASIC31.15■■■□□ 2.58
ECHDC1Q9NTX5 DUX4L10-201ENST00000622460 1267 ntBASIC31.15■■■□□ 2.58
ECHDC1Q9NTX5 DUX4L25-201ENST00000624915 1269 ntBASIC31.15■■■□□ 2.58
ECHDC1Q9NTX5 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC31.15■■■□□ 2.58
ECHDC1Q9NTX5 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC31.14■■■□□ 2.58
ECHDC1Q9NTX5 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC31.14■■■□□ 2.58
ECHDC1Q9NTX5 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC31.14■■■□□ 2.57
ECHDC1Q9NTX5 PROC-203ENST00000409048 1586 ntTSL 5 BASIC31.13■■■□□ 2.57
ECHDC1Q9NTX5 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
ECHDC1Q9NTX5 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
ECHDC1Q9NTX5 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC31.13■■■□□ 2.57
ECHDC1Q9NTX5 AP002414.2-202ENST00000590929 1450 ntBASIC31.13■■■□□ 2.57
ECHDC1Q9NTX5 AC110285.7-201ENST00000624417 1536 ntBASIC31.13■■■□□ 2.57
ECHDC1Q9NTX5 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
ECHDC1Q9NTX5 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
ECHDC1Q9NTX5 MIR7108-201ENST00000614319 87 ntBASIC31.12■■■□□ 2.57
ECHDC1Q9NTX5 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
ECHDC1Q9NTX5 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC31.12■■■□□ 2.57
ECHDC1Q9NTX5 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC31.11■■■□□ 2.57
ECHDC1Q9NTX5 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC31.11■■■□□ 2.57
ECHDC1Q9NTX5 RNF166-209ENST00000567844 633 ntTSL 5 BASIC31.11■■■□□ 2.57
ECHDC1Q9NTX5 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC31.11■■■□□ 2.57
ECHDC1Q9NTX5 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC31.1■■■□□ 2.57
ECHDC1Q9NTX5 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC31.1■■■□□ 2.57
ECHDC1Q9NTX5 AC142086.6-201ENST00000621154 1765 ntBASIC31.1■■■□□ 2.57
ECHDC1Q9NTX5 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC31.1■■■□□ 2.57
ECHDC1Q9NTX5 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
ECHDC1Q9NTX5 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC31.09■■■□□ 2.57
ECHDC1Q9NTX5 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
ECHDC1Q9NTX5 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.09■■■□□ 2.57
ECHDC1Q9NTX5 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC31.08■■■□□ 2.57
ECHDC1Q9NTX5 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC31.08■■■□□ 2.57
ECHDC1Q9NTX5 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC31.08■■■□□ 2.57
ECHDC1Q9NTX5 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC31.07■■■□□ 2.56
ECHDC1Q9NTX5 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC31.07■■■□□ 2.56
ECHDC1Q9NTX5 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC31.07■■■□□ 2.56
ECHDC1Q9NTX5 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC31.07■■■□□ 2.56
ECHDC1Q9NTX5 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC31.06■■■□□ 2.56
ECHDC1Q9NTX5 PEX7-203ENST00000541292 945 ntTSL 5 BASIC31.06■■■□□ 2.56
ECHDC1Q9NTX5 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC31.06■■■□□ 2.56
ECHDC1Q9NTX5 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
ECHDC1Q9NTX5 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC31.04■■■□□ 2.56
ECHDC1Q9NTX5 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
ECHDC1Q9NTX5 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC31.03■■■□□ 2.56
ECHDC1Q9NTX5 AGPS-202ENST00000409888 815 ntTSL 4 BASIC31.03■■■□□ 2.56
ECHDC1Q9NTX5 CR559946.2-201ENST00000623684 991 ntBASIC31.03■■■□□ 2.56
ECHDC1Q9NTX5 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC31.03■■■□□ 2.56
ECHDC1Q9NTX5 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC31.02■■■□□ 2.56
ECHDC1Q9NTX5 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC31.02■■■□□ 2.56
ECHDC1Q9NTX5 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC31.02■■■□□ 2.56
ECHDC1Q9NTX5 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
ECHDC1Q9NTX5 MACF1-219ENST00000484793 834 ntTSL 2 BASIC31.01■■■□□ 2.55
ECHDC1Q9NTX5 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC31.01■■■□□ 2.55
ECHDC1Q9NTX5 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC31.01■■■□□ 2.55
ECHDC1Q9NTX5 HTR6-201ENST00000289753 1984 ntAPPRIS P1 TSL 1 (best) BASIC31.01■■■□□ 2.55
ECHDC1Q9NTX5 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC31■■■□□ 2.55
ECHDC1Q9NTX5 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC31■■■□□ 2.55
ECHDC1Q9NTX5 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
ECHDC1Q9NTX5 MIR3648-2-201ENST00000581792 180 ntBASIC30.99■■■□□ 2.55
ECHDC1Q9NTX5 MIR3648-1-201ENST00000615959 180 ntBASIC30.99■■■□□ 2.55
ECHDC1Q9NTX5 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC30.99■■■□□ 2.55
ECHDC1Q9NTX5 HES6-205ENST00000409356 528 ntTSL 2 BASIC30.98■■■□□ 2.55
ECHDC1Q9NTX5 PVT1-219ENST00000523427 938 ntTSL 3 BASIC30.98■■■□□ 2.55
ECHDC1Q9NTX5 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC30.97■■■□□ 2.55
ECHDC1Q9NTX5 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
ECHDC1Q9NTX5 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC30.97■■■□□ 2.55
ECHDC1Q9NTX5 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
ECHDC1Q9NTX5 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC30.97■■■□□ 2.55
ECHDC1Q9NTX5 CHST11-202ENST00000546689 756 ntTSL 2 BASIC30.97■■■□□ 2.55
ECHDC1Q9NTX5 GDI1-215ENST00000630693 786 ntTSL 4 BASIC30.97■■■□□ 2.55
ECHDC1Q9NTX5 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC30.97■■■□□ 2.55
ECHDC1Q9NTX5 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC30.96■■■□□ 2.55
ECHDC1Q9NTX5 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC30.96■■■□□ 2.55
ECHDC1Q9NTX5 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
ECHDC1Q9NTX5 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
ECHDC1Q9NTX5 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC30.96■■■□□ 2.55
ECHDC1Q9NTX5 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
ECHDC1Q9NTX5 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC30.95■■■□□ 2.55
ECHDC1Q9NTX5 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
ECHDC1Q9NTX5 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC30.94■■■□□ 2.54
ECHDC1Q9NTX5 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC30.94■■■□□ 2.54
ECHDC1Q9NTX5 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC30.94■■■□□ 2.54
ECHDC1Q9NTX5 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
ECHDC1Q9NTX5 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
ECHDC1Q9NTX5 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
ECHDC1Q9NTX5 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
ECHDC1Q9NTX5 AC016575.1-201ENST00000607026 382 ntBASIC30.91■■■□□ 2.54
ECHDC1Q9NTX5 RPS2-210ENST00000530225 765 ntTSL 2 BASIC30.9■■■□□ 2.54
ECHDC1Q9NTX5 AC018358.1-201ENST00000631079 1402 ntBASIC30.9■■■□□ 2.54
ECHDC1Q9NTX5 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
ECHDC1Q9NTX5 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
ECHDC1Q9NTX5 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
ECHDC1Q9NTX5 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC30.89■■■□□ 2.54
ECHDC1Q9NTX5 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC30.88■■■□□ 2.53
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms