Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
APOBP04114 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
APOBP04114 AL592293.1-201ENST00000502889 1188 ntBASIC16.32■□□□□ 0.2
APOBP04114 CHST11-203ENST00000547956 936 ntTSL 2 BASIC16.31■□□□□ 0.2
APOBP04114 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOBP04114 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
APOBP04114 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
APOBP04114 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
APOBP04114 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
APOBP04114 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC16.3■□□□□ 0.2
APOBP04114 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
APOBP04114 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
APOBP04114 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
APOBP04114 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC16.29■□□□□ 0.2
APOBP04114 RPS2-210ENST00000530225 765 ntTSL 2 BASIC16.29■□□□□ 0.2
APOBP04114 AC010864.1-201ENST00000609407 1511 ntBASIC16.29■□□□□ 0.2
APOBP04114 AC110285.7-201ENST00000624417 1536 ntBASIC16.29■□□□□ 0.2
APOBP04114 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
APOBP04114 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
APOBP04114 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
APOBP04114 AC127502.1-201ENST00000399971 1502 ntBASIC16.28■□□□□ 0.2
APOBP04114 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
APOBP04114 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
APOBP04114 MOB2-207ENST00000614710 705 ntTSL 5 BASIC16.28■□□□□ 0.2
APOBP04114 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
APOBP04114 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC16.28■□□□□ 0.2
APOBP04114 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
APOBP04114 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
APOBP04114 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
APOBP04114 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
APOBP04114 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
APOBP04114 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
APOBP04114 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
APOBP04114 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC16.27■□□□□ 0.19
APOBP04114 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
APOBP04114 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
APOBP04114 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
APOBP04114 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
APOBP04114 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
APOBP04114 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
APOBP04114 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
APOBP04114 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
APOBP04114 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
APOBP04114 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
APOBP04114 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
APOBP04114 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
APOBP04114 PEX7-203ENST00000541292 945 ntTSL 5 BASIC16.25■□□□□ 0.19
APOBP04114 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC16.25■□□□□ 0.19
APOBP04114 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC16.25■□□□□ 0.19
APOBP04114 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOBP04114 DUX4L18-201ENST00000553347 1267 ntBASIC16.24■□□□□ 0.19
APOBP04114 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOBP04114 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC16.24■□□□□ 0.19
APOBP04114 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
APOBP04114 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
APOBP04114 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
APOBP04114 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOBP04114 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
APOBP04114 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOBP04114 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOBP04114 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOBP04114 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
APOBP04114 MIR219A2-201ENST00000608502 1504 ntBASIC16.23■□□□□ 0.19
APOBP04114 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
APOBP04114 AC135983.2-203ENST00000454486 1613 ntBASIC16.22■□□□□ 0.19
APOBP04114 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
APOBP04114 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
APOBP04114 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
APOBP04114 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
APOBP04114 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
APOBP04114 AC007029.1-201ENST00000604183 313 ntBASIC16.21■□□□□ 0.19
APOBP04114 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC16.21■□□□□ 0.19
APOBP04114 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
APOBP04114 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
APOBP04114 AC009299.2-201ENST00000482477 511 ntBASIC16.21■□□□□ 0.18
APOBP04114 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC16.21■□□□□ 0.18
APOBP04114 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
APOBP04114 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
APOBP04114 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
APOBP04114 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC16.2■□□□□ 0.18
APOBP04114 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
APOBP04114 MIR935-201ENST00000401179 91 ntBASIC16.2■□□□□ 0.18
APOBP04114 RP9P-202ENST00000450133 1212 ntBASIC16.2■□□□□ 0.18
APOBP04114 OR2A1-AS1-204ENST00000470435 602 ntBASIC16.19■□□□□ 0.18
APOBP04114 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC16.19■□□□□ 0.18
APOBP04114 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC16.19■□□□□ 0.18
APOBP04114 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
APOBP04114 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
APOBP04114 AC103834.1-201ENST00000520383 144 ntBASIC16.19■□□□□ 0.18
APOBP04114 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
APOBP04114 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
APOBP04114 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
APOBP04114 SPCS2P3-201ENST00000500401 656 ntBASIC16.18■□□□□ 0.18
APOBP04114 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
APOBP04114 AC009831.1-201ENST00000580420 1582 ntBASIC16.18■□□□□ 0.18
APOBP04114 THA1P-201ENST00000590384 1145 ntBASIC16.18■□□□□ 0.18
APOBP04114 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
APOBP04114 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC16.17■□□□□ 0.18
APOBP04114 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
APOBP04114 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms