Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
PDGFBP01127 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
PDGFBP01127 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PDGFBP01127 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
PDGFBP01127 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC26.24■■□□□ 1.79
PDGFBP01127 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
PDGFBP01127 AC135983.2-203ENST00000454486 1613 ntBASIC26.23■■□□□ 1.79
PDGFBP01127 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC26.22■■□□□ 1.79
PDGFBP01127 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
PDGFBP01127 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
PDGFBP01127 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
PDGFBP01127 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
PDGFBP01127 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
PDGFBP01127 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PDGFBP01127 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
PDGFBP01127 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
PDGFBP01127 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
PDGFBP01127 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
PDGFBP01127 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC26.2■■□□□ 1.78
PDGFBP01127 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC26.2■■□□□ 1.78
PDGFBP01127 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
PDGFBP01127 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
PDGFBP01127 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
PDGFBP01127 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC26.19■■□□□ 1.78
PDGFBP01127 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC26.19■■□□□ 1.78
PDGFBP01127 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC26.19■■□□□ 1.78
PDGFBP01127 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
PDGFBP01127 AL592293.1-201ENST00000502889 1188 ntBASIC26.18■■□□□ 1.78
PDGFBP01127 MOB2-207ENST00000614710 705 ntTSL 5 BASIC26.18■■□□□ 1.78
PDGFBP01127 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC26.17■■□□□ 1.78
PDGFBP01127 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC26.17■■□□□ 1.78
PDGFBP01127 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
PDGFBP01127 AC127502.1-201ENST00000399971 1502 ntBASIC26.16■■□□□ 1.78
PDGFBP01127 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC26.15■■□□□ 1.78
PDGFBP01127 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC26.15■■□□□ 1.78
PDGFBP01127 AC131212.1-201ENST00000613771 668 ntBASIC26.15■■□□□ 1.78
PDGFBP01127 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
PDGFBP01127 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
PDGFBP01127 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
PDGFBP01127 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
PDGFBP01127 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC26.14■■□□□ 1.78
PDGFBP01127 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC26.13■■□□□ 1.77
PDGFBP01127 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
PDGFBP01127 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC26.13■■□□□ 1.77
PDGFBP01127 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC26.12■■□□□ 1.77
PDGFBP01127 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC26.12■■□□□ 1.77
PDGFBP01127 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
PDGFBP01127 RPS2-210ENST00000530225 765 ntTSL 2 BASIC26.12■■□□□ 1.77
PDGFBP01127 MED25-210ENST00000612854 801 ntTSL 5 BASIC26.12■■□□□ 1.77
PDGFBP01127 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
PDGFBP01127 MED25-214ENST00000622402 642 ntTSL 5 BASIC26.12■■□□□ 1.77
PDGFBP01127 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
PDGFBP01127 AC009831.1-201ENST00000580420 1582 ntBASIC26.12■■□□□ 1.77
PDGFBP01127 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
PDGFBP01127 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
PDGFBP01127 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC26.11■■□□□ 1.77
PDGFBP01127 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC26.11■■□□□ 1.77
PDGFBP01127 AL157400.5-201ENST00000507624 621 ntBASIC26.1■■□□□ 1.77
PDGFBP01127 AC133552.2-201ENST00000619106 1032 ntBASIC26.1■■□□□ 1.77
PDGFBP01127 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC26.1■■□□□ 1.77
PDGFBP01127 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
PDGFBP01127 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
PDGFBP01127 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC26.08■■□□□ 1.77
PDGFBP01127 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
PDGFBP01127 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
PDGFBP01127 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
PDGFBP01127 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC26.08■■□□□ 1.77
PDGFBP01127 AC007029.1-201ENST00000604183 313 ntBASIC26.08■■□□□ 1.77
PDGFBP01127 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
PDGFBP01127 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
PDGFBP01127 KRT8P33-201ENST00000508125 1423 ntBASIC26.06■■□□□ 1.76
PDGFBP01127 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
PDGFBP01127 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC26.06■■□□□ 1.76
PDGFBP01127 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
PDGFBP01127 AC009299.2-201ENST00000482477 511 ntBASIC26.05■■□□□ 1.76
PDGFBP01127 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
PDGFBP01127 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
PDGFBP01127 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC26.04■■□□□ 1.76
PDGFBP01127 THA1P-201ENST00000590384 1145 ntBASIC26.04■■□□□ 1.76
PDGFBP01127 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC26.04■■□□□ 1.76
PDGFBP01127 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
PDGFBP01127 AC010980.1-201ENST00000587192 1142 ntBASIC26.03■■□□□ 1.76
PDGFBP01127 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
PDGFBP01127 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
PDGFBP01127 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC26.01■■□□□ 1.75
PDGFBP01127 MIR935-201ENST00000401179 91 ntBASIC26.01■■□□□ 1.75
PDGFBP01127 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
PDGFBP01127 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC26.01■■□□□ 1.75
PDGFBP01127 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC26.01■■□□□ 1.75
PDGFBP01127 PEX7-203ENST00000541292 945 ntTSL 5 BASIC26.01■■□□□ 1.75
PDGFBP01127 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC26■■□□□ 1.75
PDGFBP01127 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC26■■□□□ 1.75
PDGFBP01127 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC26■■□□□ 1.75
PDGFBP01127 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
PDGFBP01127 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
PDGFBP01127 AC126177.7-201ENST00000547904 679 ntBASIC26■■□□□ 1.75
PDGFBP01127 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC26■■□□□ 1.75
PDGFBP01127 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC25.99■■□□□ 1.75
PDGFBP01127 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
PDGFBP01127 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms