Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC9.77□□□□□ -0.85
SENP3Q9H4L4 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC9.77□□□□□ -0.85
SENP3Q9H4L4 CCDC152-201ENST00000361970 3431 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
SENP3Q9H4L4 CACNA1C-220ENST00000399655 13433 ntAPPRIS ALT2 TSL 1 (best) BASIC9.76□□□□□ -0.85
SENP3Q9H4L4 LINC01234-202ENST00000547963 2088 ntTSL 2 BASIC9.76□□□□□ -0.85
SENP3Q9H4L4 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC9.76□□□□□ -0.85
SENP3Q9H4L4 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
SENP3Q9H4L4 SLC24A1-212ENST00000546330 3246 ntAPPRIS ALT2 TSL 1 (best) BASIC9.76□□□□□ -0.85
SENP3Q9H4L4 GRIN2A-202ENST00000396573 14450 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
SENP3Q9H4L4 KAT7-203ENST00000435742 3638 ntTSL 2 BASIC9.76□□□□□ -0.85
SENP3Q9H4L4 RNA5SP485-201ENST00000365053 119 ntBASIC9.76□□□□□ -0.85
SENP3Q9H4L4 RNU1-100P-201ENST00000365255 165 ntBASIC9.76□□□□□ -0.85
SENP3Q9H4L4 Y_RNA.467-201ENST00000384297 102 ntBASIC9.76□□□□□ -0.85
SENP3Q9H4L4 MIR548B-201ENST00000385247 97 ntBASIC9.76□□□□□ -0.85
SENP3Q9H4L4 AC245291.1-201ENST00000419501 328 ntBASIC9.76□□□□□ -0.85
SENP3Q9H4L4 AL353705.1-201ENST00000433468 480 ntBASIC9.76□□□□□ -0.85
SENP3Q9H4L4 RPL27AP5-201ENST00000469428 449 ntBASIC9.76□□□□□ -0.85
SENP3Q9H4L4 AC093270.2-201ENST00000486157 792 ntBASIC9.76□□□□□ -0.85
SENP3Q9H4L4 AC108022.1-201ENST00000493466 478 ntBASIC9.76□□□□□ -0.85
SENP3Q9H4L4 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC9.76□□□□□ -0.85
SENP3Q9H4L4 ZNF260-202ENST00000523638 5666 ntAPPRIS P1 TSL 2 BASIC9.76□□□□□ -0.85
SENP3Q9H4L4 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
SENP3Q9H4L4 MUT-201ENST00000274813 3749 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
SENP3Q9H4L4 AL162171.3-201ENST00000617439 3178 ntBASIC9.76□□□□□ -0.85
SENP3Q9H4L4 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
SENP3Q9H4L4 C2CD5-212ENST00000542676 3438 ntTSL 2 BASIC9.76□□□□□ -0.85
SENP3Q9H4L4 TGFB2-202ENST00000366930 4969 ntAPPRIS P1 TSL 1 (best) BASIC9.76□□□□□ -0.85
SENP3Q9H4L4 MEIOC-202ENST00000409464 4067 ntAPPRIS ALT2 TSL 2 BASIC9.76□□□□□ -0.85
SENP3Q9H4L4 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC9.76□□□□□ -0.85
SENP3Q9H4L4 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC9.75□□□□□ -0.85
SENP3Q9H4L4 ST5-237ENST00000530991 3396 ntTSL 2 BASIC9.75□□□□□ -0.85
SENP3Q9H4L4 LINC02179-201ENST00000561523 3673 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
SENP3Q9H4L4 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC9.75□□□□□ -0.85
SENP3Q9H4L4 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC9.75□□□□□ -0.85
SENP3Q9H4L4 AC004076.2-201ENST00000620532 3323 ntBASIC9.75□□□□□ -0.85
SENP3Q9H4L4 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
SENP3Q9H4L4 Z83839.2-201ENST00000436294 274 ntTSL 5 BASIC9.75□□□□□ -0.85
SENP3Q9H4L4 RNU6-703P-201ENST00000516946 107 ntBASIC9.75□□□□□ -0.85
SENP3Q9H4L4 AC005544.1-201ENST00000584277 460 ntTSL 3 BASIC9.75□□□□□ -0.85
SENP3Q9H4L4 SMIM12P1-201ENST00000603004 274 ntBASIC9.75□□□□□ -0.85
SENP3Q9H4L4 AC006133.1-201ENST00000617106 264 ntBASIC9.75□□□□□ -0.85
SENP3Q9H4L4 MIR6826-201ENST00000617808 98 ntBASIC9.75□□□□□ -0.85
SENP3Q9H4L4 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC9.75□□□□□ -0.85
SENP3Q9H4L4 KIAA1549L-201ENST00000265654 4492 ntAPPRIS ALT2 TSL 2 BASIC9.75□□□□□ -0.85
SENP3Q9H4L4 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
SENP3Q9H4L4 LINC00559-201ENST00000569476 3867 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
SENP3Q9H4L4 FGFR2-205ENST00000357555 3690 ntTSL 2 BASIC9.75□□□□□ -0.85
SENP3Q9H4L4 THADA-204ENST00000403856 6939 ntTSL 1 (best) BASIC9.75□□□□□ -0.85
SENP3Q9H4L4 OR2T33-202ENST00000641220 4118 ntAPPRIS P1 BASIC9.75□□□□□ -0.85
SENP3Q9H4L4 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
SENP3Q9H4L4 TLR10-202ENST00000361424 3484 ntAPPRIS P1 TSL 1 (best) BASIC9.75□□□□□ -0.85
SENP3Q9H4L4 TNPO1-204ENST00000506351 3028 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
SENP3Q9H4L4 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC9.74□□□□□ -0.85
SENP3Q9H4L4 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
SENP3Q9H4L4 Y_RNA.203-201ENST00000364106 102 ntBASIC9.74□□□□□ -0.85
SENP3Q9H4L4 MIR562-201ENST00000384894 95 ntBASIC9.74□□□□□ -0.85
SENP3Q9H4L4 AC017078.1-201ENST00000416146 368 ntBASIC9.74□□□□□ -0.85
SENP3Q9H4L4 snoU13.3-201ENST00000459441 104 ntBASIC9.74□□□□□ -0.85
SENP3Q9H4L4 RPL23AP56-201ENST00000460778 453 ntBASIC9.74□□□□□ -0.85
SENP3Q9H4L4 AC231760.1-201ENST00000498002 260 ntBASIC9.74□□□□□ -0.85
SENP3Q9H4L4 RNA5SP278-201ENST00000517055 102 ntBASIC9.74□□□□□ -0.85
SENP3Q9H4L4 RNU6-1270P-201ENST00000517128 108 ntBASIC9.74□□□□□ -0.85
SENP3Q9H4L4 MIR3923-201ENST00000579521 83 ntBASIC9.74□□□□□ -0.85
SENP3Q9H4L4 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
SENP3Q9H4L4 IPCEF1-201ENST00000265198 6689 ntAPPRIS P3 TSL 1 (best) BASIC9.74□□□□□ -0.85
SENP3Q9H4L4 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
SENP3Q9H4L4 SORBS2-221ENST00000437304 3381 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
SENP3Q9H4L4 CNTNAP4-206ENST00000478060 3708 ntTSL 5 BASIC9.74□□□□□ -0.85
SENP3Q9H4L4 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC9.74□□□□□ -0.85
SENP3Q9H4L4 MAPK10-371ENST00000641952 5209 ntBASIC9.74□□□□□ -0.85
SENP3Q9H4L4 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
SENP3Q9H4L4 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
SENP3Q9H4L4 ADGRE3-201ENST00000253673 2254 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
SENP3Q9H4L4 NLRP9-201ENST00000332836 3484 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
SENP3Q9H4L4 LINC01613-201ENST00000561476 2780 ntBASIC9.73□□□□□ -0.85
SENP3Q9H4L4 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
SENP3Q9H4L4 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC9.73□□□□□ -0.85
SENP3Q9H4L4 HMGB4-204ENST00000522796 2505 ntAPPRIS P1 TSL 5 BASIC9.73□□□□□ -0.85
SENP3Q9H4L4 ANKRD36BP2-207ENST00000622311 5398 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
SENP3Q9H4L4 RNA5SP172-201ENST00000365061 118 ntBASIC9.73□□□□□ -0.85
SENP3Q9H4L4 DAPL1-203ENST00000409042 544 ntTSL 4 BASIC9.73□□□□□ -0.85
SENP3Q9H4L4 PMS2P3-203ENST00000422064 567 ntTSL 5 BASIC9.73□□□□□ -0.85
SENP3Q9H4L4 AL645939.3-201ENST00000435408 225 ntBASIC9.73□□□□□ -0.85
SENP3Q9H4L4 COL11A2P1-205ENST00000441798 676 ntBASIC9.73□□□□□ -0.85
SENP3Q9H4L4 AC080013.2-201ENST00000460866 323 ntBASIC9.73□□□□□ -0.85
SENP3Q9H4L4 RPS26P55-201ENST00000471178 356 ntBASIC9.73□□□□□ -0.85
SENP3Q9H4L4 AC009163.5-201ENST00000575421 637 ntBASIC9.73□□□□□ -0.85
SENP3Q9H4L4 MRPS5P4-201ENST00000592830 325 ntBASIC9.73□□□□□ -0.85
SENP3Q9H4L4 MIR6719-201ENST00000622428 87 ntBASIC9.73□□□□□ -0.85
SENP3Q9H4L4 SNX18P10-201ENST00000625014 519 ntBASIC9.73□□□□□ -0.85
SENP3Q9H4L4 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC9.73□□□□□ -0.85
SENP3Q9H4L4 SNORA16A-202ENST00000628458 135 ntBASIC9.73□□□□□ -0.85
SENP3Q9H4L4 FYB1-210ENST00000515010 2578 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
SENP3Q9H4L4 FMN2-206ENST00000543681 2902 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
SENP3Q9H4L4 THADA-202ENST00000402360 2974 ntTSL 5 BASIC9.73□□□□□ -0.85
SENP3Q9H4L4 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC9.73□□□□□ -0.85
SENP3Q9H4L4 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
SENP3Q9H4L4 NXPE3-203ENST00000477909 3450 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
SENP3Q9H4L4 KIAA1324L-203ENST00000416314 3179 ntAPPRIS P3 TSL 2 BASIC9.73□□□□□ -0.85
SENP3Q9H4L4 TMBIM6-209ENST00000547798 2494 ntAPPRIS ALT2 TSL 2 BASIC9.73□□□□□ -0.85
Retrieved 100 of 98,524 protein–RNA pairs in 133.2 ms