Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 Z99127.3-201ENST00000448158 395 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 ELOCP23-201ENST00000452014 332 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 AC109925.1-201ENST00000478069 331 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 LINC00888-204ENST00000487386 421 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 AC093809.1-201ENST00000509155 340 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 RNU6-714P-201ENST00000516963 103 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 LINC02286-201ENST00000552425 285 ntTSL 2 BASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 LINC02562-201ENST00000561705 785 ntTSL 2 BASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 AC145350.1-201ENST00000567426 208 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 FAM60BP-201ENST00000578364 658 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 MIR5004-201ENST00000579078 107 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 AC037487.2-201ENST00000581796 537 ntTSL 3 BASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 MIR5195-201ENST00000583555 115 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 AP001330.4-201ENST00000604350 154 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 AC018638.7-201ENST00000605836 1114 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 AL360219.1-201ENST00000610230 366 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 AC091304.6-201ENST00000619761 202 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 AL031667.3-201ENST00000620124 655 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 AC007671.2-201ENST00000637344 619 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 MIR7153-201ENST00000637758 57 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 AC007496.3-201ENST00000624987 3443 ntBASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.5□□□□□ -1.85
CPSF3Q9UKF6 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 NF1-214ENST00000490416 1329 ntTSL 3 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 EFTUD1P2-201ENST00000514817 1603 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 RNU6-744P-201ENST00000365557 107 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 RNU6-1316P-201ENST00000384242 108 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 RNU6-253P-201ENST00000384730 105 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AL136372.1-201ENST00000403060 228 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AC109780.2-201ENST00000413467 845 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 BX119904.4-201ENST00000424402 301 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 MTND5P25-201ENST00000430499 799 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 RSU1P2-202ENST00000437884 485 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AC006028.1-201ENST00000438379 402 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AC024908.1-202ENST00000441907 764 ntTSL 2 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 RPL30P9-201ENST00000465586 330 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 RPS3AP22-201ENST00000488297 769 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 RN7SL504P-201ENST00000494496 287 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AC093278.1-201ENST00000494700 600 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 MRPS33P3-201ENST00000513456 322 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AC087276.1-201ENST00000529659 480 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 OOSP2-203ENST00000532905 496 ntAPPRIS ALT2 TSL 3 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AL450442.1-201ENST00000554042 854 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 MTND3P12-201ENST00000559068 328 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 OR4K8P-201ENST00000578842 1048 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 NIFKP6-201ENST00000598115 845 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AC099778.2-201ENST00000610904 211 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AC068831.7-201ENST00000616954 363 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AC079416.3-201ENST00000624479 549 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 CRYM-AS1-204ENST00000637983 556 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 AC092326.2-201ENST00000624772 1561 ntBASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CPSF3Q9UKF6 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 MAPK10-362ENST00000641864 4484 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AL161781.1-201ENST00000354277 403 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 RNU6-173P-201ENST00000364215 104 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 MIR135A2-201ENST00000384854 100 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 RNU6-1077P-201ENST00000410506 102 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 SSXP9-201ENST00000417503 292 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AL137014.1-201ENST00000420490 1226 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AL353771.1-201ENST00000422107 457 ntTSL 3 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 UBE2D3P2-201ENST00000424409 445 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AC003084.1-201ENST00000427030 435 ntTSL 5 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 AC004866.2-201ENST00000438285 481 ntBASIC3.48□□□□□ -1.85
CPSF3Q9UKF6 HIGD1AP11-201ENST00000438361 280 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 157.9 ms