RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 EHMT2Q96KQ7 1210 aa6.53□□□□□ -1.36
SYNE1-201ENST00000341594 MYT1Q01538 1121 aa6.16□□□□□ -1.42
SYNE1-201ENST00000341594 TTBK1Q5TCY1 1321 aaPredicted RBP6.13□□□□□ -1.43
SYNE1-201ENST00000341594 PPARGC1BQ86YN6 1023 aaKnown RBP6.12□□□□□ -1.43
SYNE1-201ENST00000341594 PELP1Q8IZL8 1130 aaKnown RBP6.07□□□□□ -1.44
SYNE1-201ENST00000341594 DCAF8L2P0C7V8 631 aa6.06□□□□□ -1.44
SYNE1-201ENST00000341594 SLC24A1O60721 1099 aa5.99□□□□□ -1.45
SYNE1-201ENST00000341594 YTHDC1Q96MU7 727 aaKnown RBP5.94□□□□□ -1.46
SYNE1-201ENST00000341594 PCGF6Q9BYE7 350 aa5.92□□□□□ -1.46
SYNE1-201ENST00000341594 NISCHQ9Y2I1 1504 aa5.89□□□□□ -1.47
SYNE1-201ENST00000341594 CNGB1Q14028 1251 aaPredicted RBP5.89□□□□□ -1.47
SYNE1-201ENST00000341594 SUPT5HO00267 1087 aaKnown RBP5.88□□□□□ -1.47
SYNE1-201ENST00000341594 FAM9AQ8IZU1 332 aaPredicted RBP5.83□□□□□ -1.48
SYNE1-201ENST00000341594 RANGAP1P46060 587 aaPredicted RBP5.8□□□□□ -1.48
SYNE1-201ENST00000341594 LOC105371045A0A1W2PR82 267 aa5.71□□□□□ -1.5
SYNE1-201ENST00000341594 BCANQ96GW7 911 aa5.69□□□□□ -1.5
SYNE1-201ENST00000341594 ERICH6Q7L0X2 663 aa5.69□□□□□ -1.5
SYNE1-201ENST00000341594 SENP3-EIF4A1A0A087X0R7 540 aa5.68□□□□□ -1.5
SYNE1-201ENST00000341594 ZEB1P37275 1124 aaPredicted RBP5.59□□□□□ -1.52
SYNE1-201ENST00000341594 SCAF1Q9H7N4 1312 aaKnown RBP5.58□□□□□ -1.52
SYNE1-201ENST00000341594 BCL11AQ9H165 835 aa5.57□□□□□ -1.52
SYNE1-201ENST00000341594 AMER1Q5JTC6 1135 aaPredicted RBP5.55□□□□□ -1.52
SYNE1-201ENST00000341594 DAXXQ9UER7 740 aaPredicted RBP5.55□□□□□ -1.52
SYNE1-201ENST00000341594 CHIC1Q5VXU3 224 aa5.54□□□□□ -1.52
SYNE1-201ENST00000341594 SHROOM4Q9ULL8 1493 aa5.52□□□□□ -1.53
SYNE1-201ENST00000341594 RTN4Q9NQC3 1192 aaKnown RBP5.49□□□□□ -1.53
SYNE1-201ENST00000341594 GTF3C3Q9Y5Q9 886 aa5.48□□□□□ -1.53
SYNE1-201ENST00000341594 KAT6BQ8WYB5 2073 aa5.48□□□□□ -1.53
SYNE1-201ENST00000341594 CCDC180Q9P1Z9 1646 aa5.46□□□□□ -1.53
SYNE1-201ENST00000341594 CLSPNQ9HAW4 1339 aa5.45□□□□□ -1.54
SYNE1-201ENST00000341594 HRCP23327 699 aa5.45□□□□□ -1.54
SYNE1-201ENST00000341594 CCDC136Q96JN2 1154 aa5.44□□□□□ -1.54
SYNE1-201ENST00000341594 ITGAEP38570 1179 aa5.44□□□□□ -1.54
SYNE1-201ENST00000341594 POLR3GLQ9BT43 218 aa5.42□□□□□ -1.54
SYNE1-201ENST00000341594 EIF5BO60841 1220 aaKnown RBP5.41□□□□□ -1.54
SYNE1-201ENST00000341594 ATP1B4Q9UN42 357 aaPredicted RBP5.39□□□□□ -1.55
SYNE1-201ENST00000341594 C11orf95C9JLR9 678 aaPredicted RBP5.39□□□□□ -1.55
SYNE1-201ENST00000341594 IRX6P78412 446 aaPredicted RBP5.39□□□□□ -1.55
SYNE1-201ENST00000341594 CCER1Q8TC90 406 aaPredicted RBP5.39□□□□□ -1.55
SYNE1-201ENST00000341594 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.38□□□□□ -1.55
SYNE1-201ENST00000341594 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.38□□□□□ -1.55
SYNE1-201ENST00000341594 SENP3Q9H4L4 574 aaPredicted RBP5.36□□□□□ -1.55
SYNE1-201ENST00000341594 ARXQ96QS3 562 aa5.34□□□□□ -1.55
SYNE1-201ENST00000341594 HNRNPUL2Q1KMD3 747 aaKnown RBP5.33□□□□□ -1.56
SYNE1-201ENST00000341594 NBR1Q14596 966 aa5.32□□□□□ -1.56
SYNE1-201ENST00000341594 MYT1LQ9UL68 1186 aa5.32□□□□□ -1.56
SYNE1-201ENST00000341594 NEUROD1Q13562 356 aa5.32□□□□□ -1.56
SYNE1-201ENST00000341594 HIRIP3Q9BW71 556 aaPredicted RBP5.3□□□□□ -1.56
SYNE1-201ENST00000341594 ZBTB7CA1YPR0 619 aa5.29□□□□□ -1.56
SYNE1-201ENST00000341594 DCAF1Q9Y4B6 1507 aa5.28□□□□□ -1.56
SYNE1-201ENST00000341594 NPM2Q86SE8 214 aaKnown RBP5.28□□□□□ -1.56
SYNE1-201ENST00000341594 TPRNQ4KMQ1 711 aa5.28□□□□□ -1.56
SYNE1-201ENST00000341594 SALL2Q9Y467 1007 aaPredicted RBP5.27□□□□□ -1.57
SYNE1-201ENST00000341594 NCBP3Q53F19 620 aaKnown RBP5.27□□□□□ -1.57
SYNE1-201ENST00000341594 ARID4BQ4LE39 1312 aaPredicted RBP5.26□□□□□ -1.57
SYNE1-201ENST00000341594 ANO8Q9HCE9 1232 aaPredicted RBP5.24□□□□□ -1.57
SYNE1-201ENST00000341594 CENPBP07199 599 aaPredicted RBP5.24□□□□□ -1.57
SYNE1-201ENST00000341594 HOMEZQ8IX15 550 aa5.19□□□□□ -1.58
SYNE1-201ENST00000341594 CSRNP3Q8WYN3 585 aa5.19□□□□□ -1.58
SYNE1-201ENST00000341594 ARID3AQ99856 593 aa5.18□□□□□ -1.58
SYNE1-201ENST00000341594 ACIN1Q9UKV3 1341 aaKnown RBP5.17□□□□□ -1.58
SYNE1-201ENST00000341594 TRIM26Q12899 539 aaPredicted RBP5.16□□□□□ -1.58
SYNE1-201ENST00000341594 MIER1Q8N108 512 aa5.16□□□□□ -1.58
SYNE1-201ENST00000341594 DIEXFQ68CQ4 756 aaKnown RBP5.16□□□□□ -1.58
SYNE1-201ENST00000341594 GLIPR1L2Q4G1C9 344 aa5.15□□□□□ -1.59
SYNE1-201ENST00000341594 FKBP8Q14318 412 aa5.15□□□□□ -1.59
SYNE1-201ENST00000341594 BCL11BQ9C0K0 894 aaPredicted RBP5.15□□□□□ -1.59
SYNE1-201ENST00000341594 MYO15BQ96JP2 1530 aa5.14□□□□□ -1.59
SYNE1-201ENST00000341594 PLEKHG5O94827 1062 aa5.12□□□□□ -1.59
SYNE1-201ENST00000341594 TIMELESSQ9UNS1 1208 aa5.11□□□□□ -1.59
SYNE1-201ENST00000341594 HMGB1P09429 215 aaKnown RBP5.11□□□□□ -1.59
SYNE1-201ENST00000341594 CDK11AQ9UQ88 783 aaPredicted RBP5.1□□□□□ -1.59
SYNE1-201ENST00000341594 KCNH8Q96L42 1107 aa5.09□□□□□ -1.59
SYNE1-201ENST00000341594 SPRYD3Q8NCJ5 442 aa5.08□□□□□ -1.6
SYNE1-201ENST00000341594 APLP2Q06481 763 aa5.08□□□□□ -1.6
SYNE1-201ENST00000341594 LAS1LQ9Y4W2 734 aaKnown RBP5.07□□□□□ -1.6
SYNE1-201ENST00000341594 ARID3CA6NKF2 412 aa5.06□□□□□ -1.6
SYNE1-201ENST00000341594 MAPK8IP2Q13387 824 aaPredicted RBP5.06□□□□□ -1.6
SYNE1-201ENST00000341594 PLPPR3Q6T4P5 718 aa5.06□□□□□ -1.6
SYNE1-201ENST00000341594 A0A0U1RQG5 324 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-201ENST00000341594 AEBP2Q6ZN18 517 aaPredicted RBP5.05□□□□□ -1.6
SYNE1-201ENST00000341594 SLC4A1APQ9BWU0 796 aaKnown RBP5.05□□□□□ -1.6
SYNE1-201ENST00000341594 SLC4A3P48751 1232 aa5.04□□□□□ -1.6
SYNE1-201ENST00000341594 CACNA1FO60840 1977 aa5.03□□□□□ -1.6
SYNE1-201ENST00000341594 UBTFP17480 764 aaKnown RBP5.02□□□□□ -1.61
SYNE1-201ENST00000341594 ERICH6BQ5W0A0 696 aa5.02□□□□□ -1.61
SYNE1-201ENST00000341594 DDX10Q13206 875 aaKnown RBP5.02□□□□□ -1.61
SYNE1-201ENST00000341594 TRIM52Q96A61 297 aa5.02□□□□□ -1.61
SYNE1-201ENST00000341594 TAOK2Q9UL54 1235 aa5.01□□□□□ -1.61
SYNE1-201ENST00000341594 NEFLP07196 543 aa5□□□□□ -1.61
SYNE1-201ENST00000341594 ZBTB9Q96C00 473 aa5□□□□□ -1.61
SYNE1-201ENST00000341594 CFAP65Q6ZU64 1925 aaKnown RBP4.99□□□□□ -1.61
SYNE1-201ENST00000341594 DEKP35659 375 aaKnown RBP4.98□□□□□ -1.61
SYNE1-201ENST00000341594 RTL5Q5HYW3 569 aaPredicted RBP4.98□□□□□ -1.61
SYNE1-201ENST00000341594 POLR1AO95602 1720 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-201ENST00000341594 TULP1O00294 542 aaPredicted RBP4.97□□□□□ -1.61
SYNE1-201ENST00000341594 ZCCHC6Q5VYS8 1495 aaKnown RBP4.96□□□□□ -1.62
SYNE1-201ENST00000341594 ZNF326Q5BKZ1 582 aaKnown RBP4.96□□□□□ -1.62
SYNE1-201ENST00000341594 EEA1Q15075 1411 aa4.95□□□□□ -1.62
SYNE1-201ENST00000341594 SUPT16HQ9Y5B9 1047 aaKnown RBP4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms