Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 KRT17P3-201ENST00000420566 1262 ntBASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 AC026366.1-201ENST00000488803 879 ntBASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 C1QL1P1-201ENST00000568105 661 ntBASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 AC069544.1-201ENST00000609399 999 ntBASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
HIF3AQ9Y2N7 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 RNA5SP413-201ENST00000516373 109 ntBASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 MTDHP1-201ENST00000605323 784 ntBASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 AC004264.1-201ENST00000608354 794 ntBASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 AL138781.2-201ENST00000617896 1843 ntBASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.28■□□□□ 0.36
HIF3AQ9Y2N7 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC17.27■□□□□ 0.36
HIF3AQ9Y2N7 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HIF3AQ9Y2N7 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HIF3AQ9Y2N7 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.27■□□□□ 0.35
HIF3AQ9Y2N7 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC17.27■□□□□ 0.35
HIF3AQ9Y2N7 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HIF3AQ9Y2N7 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC17.27■□□□□ 0.35
HIF3AQ9Y2N7 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HIF3AQ9Y2N7 FEM1AP3-201ENST00000403722 1741 ntBASIC17.27■□□□□ 0.35
HIF3AQ9Y2N7 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
HIF3AQ9Y2N7 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC17.27■□□□□ 0.35
HIF3AQ9Y2N7 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.27■□□□□ 0.35
HIF3AQ9Y2N7 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC17.27■□□□□ 0.35
HIF3AQ9Y2N7 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HIF3AQ9Y2N7 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 27 ms