Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 RNF152P1-201ENST00000397754 604 ntBASIC21.69■■□□□ 1.06
COL20A1Q9P218 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC21.69■■□□□ 1.06
COL20A1Q9P218 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC21.69■■□□□ 1.06
COL20A1Q9P218 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL20A1Q9P218 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC21.69■■□□□ 1.06
COL20A1Q9P218 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC21.69■■□□□ 1.06
COL20A1Q9P218 TPM1-226ENST00000560959 925 ntTSL 2 BASIC21.69■■□□□ 1.06
COL20A1Q9P218 AL441883.1-201ENST00000566170 1045 ntBASIC21.69■■□□□ 1.06
COL20A1Q9P218 RMI2-205ENST00000576027 818 ntTSL 2 BASIC21.69■■□□□ 1.06
COL20A1Q9P218 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL20A1Q9P218 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
COL20A1Q9P218 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
COL20A1Q9P218 AC073130.3-201ENST00000624389 2278 ntBASIC21.69■■□□□ 1.06
COL20A1Q9P218 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.69■■□□□ 1.06
COL20A1Q9P218 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL20A1Q9P218 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC21.69■■□□□ 1.06
COL20A1Q9P218 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL20A1Q9P218 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
COL20A1Q9P218 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL20A1Q9P218 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC21.69■■□□□ 1.06
COL20A1Q9P218 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL20A1Q9P218 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL20A1Q9P218 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL20A1Q9P218 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL20A1Q9P218 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL20A1Q9P218 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL20A1Q9P218 TSPY5P-201ENST00000426936 936 ntBASIC21.68■■□□□ 1.06
COL20A1Q9P218 RNF146-204ENST00000476956 884 ntTSL 2 BASIC21.68■■□□□ 1.06
COL20A1Q9P218 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC21.68■■□□□ 1.06
COL20A1Q9P218 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.68■■□□□ 1.06
COL20A1Q9P218 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC21.68■■□□□ 1.06
COL20A1Q9P218 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC21.68■■□□□ 1.06
COL20A1Q9P218 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC21.68■■□□□ 1.06
COL20A1Q9P218 MYC-208ENST00000641036 567 ntBASIC21.68■■□□□ 1.06
COL20A1Q9P218 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
COL20A1Q9P218 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC21.68■■□□□ 1.06
COL20A1Q9P218 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC21.68■■□□□ 1.06
COL20A1Q9P218 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC21.68■■□□□ 1.06
COL20A1Q9P218 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC21.68■■□□□ 1.06
COL20A1Q9P218 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL20A1Q9P218 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL20A1Q9P218 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL20A1Q9P218 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL20A1Q9P218 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL20A1Q9P218 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
COL20A1Q9P218 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC21.67■■□□□ 1.06
COL20A1Q9P218 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.67■■□□□ 1.06
COL20A1Q9P218 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL20A1Q9P218 TEX21P-204ENST00000641479 1693 ntBASIC21.67■■□□□ 1.06
COL20A1Q9P218 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL20A1Q9P218 Telomerase-vert.1-201ENST00000363312 438 ntBASIC21.67■■□□□ 1.06
COL20A1Q9P218 FAM8A6P-201ENST00000407496 1135 ntBASIC21.67■■□□□ 1.06
COL20A1Q9P218 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.67■■□□□ 1.06
COL20A1Q9P218 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC21.67■■□□□ 1.06
COL20A1Q9P218 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC21.67■■□□□ 1.06
COL20A1Q9P218 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL20A1Q9P218 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL20A1Q9P218 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.67■■□□□ 1.06
COL20A1Q9P218 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.67■■□□□ 1.06
COL20A1Q9P218 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL20A1Q9P218 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL20A1Q9P218 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
COL20A1Q9P218 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC21.66■■□□□ 1.06
COL20A1Q9P218 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL20A1Q9P218 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL20A1Q9P218 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL20A1Q9P218 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL20A1Q9P218 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL20A1Q9P218 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL20A1Q9P218 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.66■■□□□ 1.06
COL20A1Q9P218 AC087388.1-201ENST00000571370 1112 ntBASIC21.66■■□□□ 1.06
COL20A1Q9P218 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC21.66■■□□□ 1.06
COL20A1Q9P218 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL20A1Q9P218 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
COL20A1Q9P218 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL20A1Q9P218 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL20A1Q9P218 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL20A1Q9P218 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
COL20A1Q9P218 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL20A1Q9P218 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL20A1Q9P218 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC21.65■■□□□ 1.06
COL20A1Q9P218 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
COL20A1Q9P218 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
COL20A1Q9P218 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC21.65■■□□□ 1.06
COL20A1Q9P218 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC21.65■■□□□ 1.06
COL20A1Q9P218 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL20A1Q9P218 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL20A1Q9P218 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
COL20A1Q9P218 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
COL20A1Q9P218 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC21.65■■□□□ 1.06
COL20A1Q9P218 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC21.65■■□□□ 1.06
COL20A1Q9P218 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL20A1Q9P218 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL20A1Q9P218 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL20A1Q9P218 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL20A1Q9P218 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL20A1Q9P218 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
COL20A1Q9P218 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC21.64■■□□□ 1.06
COL20A1Q9P218 GPAT2P1-201ENST00000444924 1672 ntBASIC21.64■■□□□ 1.05
COL20A1Q9P218 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms