Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
DDX4Q9NQI0 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC22.64■■□□□ 1.21
DDX4Q9NQI0 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
DDX4Q9NQI0 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
DDX4Q9NQI0 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
DDX4Q9NQI0 NEK4P2-201ENST00000580004 1012 ntBASIC22.64■■□□□ 1.21
DDX4Q9NQI0 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
DDX4Q9NQI0 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC22.64■■□□□ 1.21
DDX4Q9NQI0 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
DDX4Q9NQI0 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
DDX4Q9NQI0 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
DDX4Q9NQI0 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC22.63■■□□□ 1.21
DDX4Q9NQI0 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
DDX4Q9NQI0 TREX1-205ENST00000625293 1783 ntBASIC22.63■■□□□ 1.21
DDX4Q9NQI0 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
DDX4Q9NQI0 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
DDX4Q9NQI0 AC005332.1-201ENST00000577698 1310 ntBASIC22.63■■□□□ 1.21
DDX4Q9NQI0 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
DDX4Q9NQI0 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
DDX4Q9NQI0 GPAT2P1-201ENST00000444924 1672 ntBASIC22.63■■□□□ 1.21
DDX4Q9NQI0 GAS2L1P1-201ENST00000420145 1480 ntBASIC22.63■■□□□ 1.21
DDX4Q9NQI0 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
DDX4Q9NQI0 SPDYE15P-201ENST00000424157 909 ntBASIC22.63■■□□□ 1.21
DDX4Q9NQI0 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC22.63■■□□□ 1.21
DDX4Q9NQI0 AC083849.1-201ENST00000615227 514 ntBASIC22.63■■□□□ 1.21
DDX4Q9NQI0 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC22.63■■□□□ 1.21
DDX4Q9NQI0 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
DDX4Q9NQI0 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC22.63■■□□□ 1.21
DDX4Q9NQI0 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
DDX4Q9NQI0 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
DDX4Q9NQI0 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 AC112907.2-201ENST00000448639 330 ntBASIC22.62■■□□□ 1.21
DDX4Q9NQI0 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 METTL23-204ENST00000586752 904 ntTSL 2 BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 DBP-204ENST00000599385 709 ntTSL 3 BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC22.62■■□□□ 1.21
DDX4Q9NQI0 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 AP000523.1-201ENST00000398242 1049 ntBASIC22.61■■□□□ 1.21
DDX4Q9NQI0 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 TP73-202ENST00000354437 2140 ntTSL 5 BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 IER3-202ENST00000376377 1350 ntBASIC22.61■■□□□ 1.21
DDX4Q9NQI0 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC22.61■■□□□ 1.21
DDX4Q9NQI0 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC22.6■■□□□ 1.21
DDX4Q9NQI0 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
DDX4Q9NQI0 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC22.6■■□□□ 1.21
DDX4Q9NQI0 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC22.6■■□□□ 1.21
DDX4Q9NQI0 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
DDX4Q9NQI0 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC22.6■■□□□ 1.21
DDX4Q9NQI0 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
DDX4Q9NQI0 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC22.6■■□□□ 1.21
DDX4Q9NQI0 PTK2-216ENST00000519881 863 ntTSL 3 BASIC22.6■■□□□ 1.21
DDX4Q9NQI0 CD81-212ENST00000526072 1172 ntTSL 5 BASIC22.6■■□□□ 1.21
DDX4Q9NQI0 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC22.6■■□□□ 1.21
DDX4Q9NQI0 AC116407.4-201ENST00000623319 1061 ntBASIC22.6■■□□□ 1.21
DDX4Q9NQI0 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC22.6■■□□□ 1.21
DDX4Q9NQI0 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC22.6■■□□□ 1.21
DDX4Q9NQI0 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
DDX4Q9NQI0 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.21
DDX4Q9NQI0 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
DDX4Q9NQI0 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
DDX4Q9NQI0 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
DDX4Q9NQI0 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC22.59■■□□□ 1.21
DDX4Q9NQI0 STARP1-201ENST00000397973 869 ntBASIC22.59■■□□□ 1.21
DDX4Q9NQI0 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC22.59■■□□□ 1.21
DDX4Q9NQI0 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
DDX4Q9NQI0 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC22.59■■□□□ 1.21
DDX4Q9NQI0 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC22.59■■□□□ 1.21
DDX4Q9NQI0 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC22.59■■□□□ 1.21
DDX4Q9NQI0 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms