Protein–RNA interactions for Protein: Q96T58

SPEN, Msx2-interacting protein, humanhuman

Known RBP Predictions only

Length 3,664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPENQ96T58 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.29■□□□□ 0.36
SPENQ96T58 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
SPENQ96T58 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
SPENQ96T58 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.29■□□□□ 0.36
SPENQ96T58 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC17.29■□□□□ 0.36
SPENQ96T58 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
SPENQ96T58 AC012676.1-201ENST00000574705 1949 ntBASIC17.28■□□□□ 0.36
SPENQ96T58 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
SPENQ96T58 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
SPENQ96T58 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SPENQ96T58 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.28■□□□□ 0.36
SPENQ96T58 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.28■□□□□ 0.36
SPENQ96T58 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
SPENQ96T58 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.28■□□□□ 0.36
SPENQ96T58 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SPENQ96T58 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC17.28■□□□□ 0.36
SPENQ96T58 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.28■□□□□ 0.36
SPENQ96T58 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC17.28■□□□□ 0.36
SPENQ96T58 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.28■□□□□ 0.36
SPENQ96T58 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.28■□□□□ 0.36
SPENQ96T58 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
SPENQ96T58 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.28■□□□□ 0.36
SPENQ96T58 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SPENQ96T58 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
SPENQ96T58 LINC00167-201ENST00000530583 1419 ntBASIC17.28■□□□□ 0.36
SPENQ96T58 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.28■□□□□ 0.36
SPENQ96T58 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SPENQ96T58 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
SPENQ96T58 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.28■□□□□ 0.36
SPENQ96T58 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SPENQ96T58 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SPENQ96T58 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
SPENQ96T58 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
SPENQ96T58 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
SPENQ96T58 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.28■□□□□ 0.36
SPENQ96T58 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC17.28■□□□□ 0.36
SPENQ96T58 AC016734.2-201ENST00000624325 1377 ntBASIC17.28■□□□□ 0.36
SPENQ96T58 GOLGA6L5P-202ENST00000515341 1828 ntBASIC17.27■□□□□ 0.36
SPENQ96T58 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SPENQ96T58 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
SPENQ96T58 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
SPENQ96T58 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SPENQ96T58 GPAT2P1-201ENST00000444924 1672 ntBASIC17.27■□□□□ 0.36
SPENQ96T58 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC17.27■□□□□ 0.36
SPENQ96T58 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SPENQ96T58 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SPENQ96T58 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC17.27■□□□□ 0.36
SPENQ96T58 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
SPENQ96T58 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC17.27■□□□□ 0.36
SPENQ96T58 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.27■□□□□ 0.36
SPENQ96T58 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.27■□□□□ 0.36
SPENQ96T58 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SPENQ96T58 LINC01006-201ENST00000333319 2292 ntBASIC17.27■□□□□ 0.36
SPENQ96T58 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
SPENQ96T58 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
SPENQ96T58 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
SPENQ96T58 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC17.27■□□□□ 0.35
SPENQ96T58 USP39-204ENST00000409766 2033 ntTSL 2 BASIC17.27■□□□□ 0.35
SPENQ96T58 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SPENQ96T58 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.27■□□□□ 0.35
SPENQ96T58 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.27■□□□□ 0.35
SPENQ96T58 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.27■□□□□ 0.35
SPENQ96T58 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC17.27■□□□□ 0.35
SPENQ96T58 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.27■□□□□ 0.35
SPENQ96T58 USP48-205ENST00000421625 2818 ntTSL 2 BASIC17.27■□□□□ 0.35
SPENQ96T58 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
SPENQ96T58 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.27■□□□□ 0.35
SPENQ96T58 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC17.26■□□□□ 0.35
SPENQ96T58 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SPENQ96T58 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SPENQ96T58 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SPENQ96T58 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SPENQ96T58 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.26■□□□□ 0.35
SPENQ96T58 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
SPENQ96T58 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.26■□□□□ 0.35
SPENQ96T58 MIR3652-201ENST00000579335 131 ntBASIC17.26■□□□□ 0.35
SPENQ96T58 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC17.26■□□□□ 0.35
SPENQ96T58 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SPENQ96T58 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SPENQ96T58 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SPENQ96T58 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
SPENQ96T58 IFNL4P1-201ENST00000607083 540 ntBASIC17.26■□□□□ 0.35
SPENQ96T58 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SPENQ96T58 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC17.26■□□□□ 0.35
SPENQ96T58 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.26■□□□□ 0.35
SPENQ96T58 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SPENQ96T58 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SPENQ96T58 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.26■□□□□ 0.35
SPENQ96T58 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
SPENQ96T58 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC17.26■□□□□ 0.35
SPENQ96T58 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
SPENQ96T58 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SPENQ96T58 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
SPENQ96T58 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SPENQ96T58 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
SPENQ96T58 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.25■□□□□ 0.35
SPENQ96T58 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SPENQ96T58 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC17.25■□□□□ 0.35
SPENQ96T58 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
SPENQ96T58 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms