Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 AC243591.1-201ENST00000452967 1364 ntBASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 GALC-202ENST00000393568 2054 ntTSL 2 BASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC22.72■■□□□ 1.23
SMC1BQ8NDV3 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 LSM5-204ENST00000409909 740 ntTSL 2 BASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 RPL18-209ENST00000550645 463 ntTSL 5 BASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 RPL18-214ENST00000552588 559 ntTSL 3 BASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 TBC1D3P2-202ENST00000577902 1649 ntBASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
SMC1BQ8NDV3 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
SMC1BQ8NDV3 AC005229.4-201ENST00000610085 2198 ntBASIC22.7■■□□□ 1.23
SMC1BQ8NDV3 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC22.7■■□□□ 1.23
SMC1BQ8NDV3 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC22.7■■□□□ 1.23
SMC1BQ8NDV3 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC22.7■■□□□ 1.22
SMC1BQ8NDV3 AL391807.1-203ENST00000604392 2365 ntBASIC22.7■■□□□ 1.22
SMC1BQ8NDV3 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SMC1BQ8NDV3 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SMC1BQ8NDV3 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
SMC1BQ8NDV3 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC22.7■■□□□ 1.22
SMC1BQ8NDV3 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SMC1BQ8NDV3 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC22.7■■□□□ 1.22
SMC1BQ8NDV3 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
SMC1BQ8NDV3 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SMC1BQ8NDV3 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC22.7■■□□□ 1.22
SMC1BQ8NDV3 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC22.7■■□□□ 1.22
SMC1BQ8NDV3 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC22.7■■□□□ 1.22
SMC1BQ8NDV3 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC22.7■■□□□ 1.22
SMC1BQ8NDV3 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.22
SMC1BQ8NDV3 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
SMC1BQ8NDV3 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
SMC1BQ8NDV3 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 AL121603.2-201ENST00000557373 2117 ntBASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 HES2-202ENST00000377836 507 ntTSL 2 BASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 UPF3AP3-201ENST00000420996 769 ntBASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 AC244107.1-201ENST00000442033 332 ntBASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 PGAM5P1-201ENST00000518923 814 ntBASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 AC009065.1-201ENST00000564055 1225 ntBASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 IGHV3-41-201ENST00000613121 348 ntBASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 CAND2-206ENST00000626378 333 ntTSL 5 BASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 AC083906.6-201ENST00000641366 219 ntBASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 AC079781.4-201ENST00000641908 219 ntBASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
SMC1BQ8NDV3 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 IGHV3-47-201ENST00000425060 335 ntBASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC22.68■■□□□ 1.22
SMC1BQ8NDV3 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC22.68■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms