Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 LIN28AP1-201ENST00000429574 405 ntBASIC17.75■□□□□ 0.43
BEST3Q8N1M1 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
BEST3Q8N1M1 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 AC073508.3-201ENST00000619697 1419 ntBASIC17.74■□□□□ 0.43
BEST3Q8N1M1 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 CFL2-205ENST00000555765 632 ntTSL 2 BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 AL049597.2-201ENST00000565575 961 ntBASIC17.74■□□□□ 0.43
BEST3Q8N1M1 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 FAM87A-204ENST00000613235 858 ntBASIC17.74■□□□□ 0.43
BEST3Q8N1M1 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
BEST3Q8N1M1 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.73■□□□□ 0.43
BEST3Q8N1M1 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 KRT8P41-201ENST00000533985 1514 ntBASIC17.73■□□□□ 0.43
BEST3Q8N1M1 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 ATP5G1P1-201ENST00000448724 379 ntBASIC17.73■□□□□ 0.43
BEST3Q8N1M1 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 AC116562.4-202ENST00000641738 218 ntBASIC17.73■□□□□ 0.43
BEST3Q8N1M1 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
BEST3Q8N1M1 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BEST3Q8N1M1 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.72■□□□□ 0.43
BEST3Q8N1M1 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BEST3Q8N1M1 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
BEST3Q8N1M1 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
BEST3Q8N1M1 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.72■□□□□ 0.43
BEST3Q8N1M1 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BEST3Q8N1M1 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
BEST3Q8N1M1 AFG3L1P-217ENST00000557444 2447 ntBASIC17.72■□□□□ 0.43
BEST3Q8N1M1 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms