Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
ABCA4P78363 CKBP1-201ENST00000565489 1086 ntBASIC16.47■□□□□ 0.23
ABCA4P78363 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
ABCA4P78363 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC16.47■□□□□ 0.23
ABCA4P78363 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC16.47■□□□□ 0.23
ABCA4P78363 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC16.47■□□□□ 0.23
ABCA4P78363 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
ABCA4P78363 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
ABCA4P78363 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC16.47■□□□□ 0.23
ABCA4P78363 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC16.47■□□□□ 0.23
ABCA4P78363 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
ABCA4P78363 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
ABCA4P78363 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
ABCA4P78363 Telomerase-vert.1-201ENST00000363312 438 ntBASIC16.47■□□□□ 0.23
ABCA4P78363 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.47■□□□□ 0.23
ABCA4P78363 KRT18P38-201ENST00000449496 1282 ntBASIC16.47■□□□□ 0.23
ABCA4P78363 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.47■□□□□ 0.23
ABCA4P78363 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC16.47■□□□□ 0.23
ABCA4P78363 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.47■□□□□ 0.23
ABCA4P78363 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
ABCA4P78363 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
ABCA4P78363 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.47■□□□□ 0.23
ABCA4P78363 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
ABCA4P78363 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC16.46■□□□□ 0.23
ABCA4P78363 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
ABCA4P78363 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
ABCA4P78363 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC16.46■□□□□ 0.23
ABCA4P78363 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
ABCA4P78363 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
ABCA4P78363 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
ABCA4P78363 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
ABCA4P78363 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
ABCA4P78363 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
ABCA4P78363 AP000593.1-201ENST00000393668 712 ntBASIC16.46■□□□□ 0.23
ABCA4P78363 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
ABCA4P78363 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC16.46■□□□□ 0.23
ABCA4P78363 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.46■□□□□ 0.23
ABCA4P78363 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC16.46■□□□□ 0.23
ABCA4P78363 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.46■□□□□ 0.23
ABCA4P78363 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC16.46■□□□□ 0.23
ABCA4P78363 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.46■□□□□ 0.23
ABCA4P78363 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
ABCA4P78363 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
ABCA4P78363 AC104417.2-201ENST00000562989 1793 ntBASIC16.46■□□□□ 0.23
ABCA4P78363 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC16.46■□□□□ 0.22
ABCA4P78363 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
ABCA4P78363 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
ABCA4P78363 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
ABCA4P78363 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC16.46■□□□□ 0.22
ABCA4P78363 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC16.46■□□□□ 0.22
ABCA4P78363 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC16.45■□□□□ 0.22
ABCA4P78363 FDX1P1-201ENST00000449115 551 ntBASIC16.45■□□□□ 0.22
ABCA4P78363 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
ABCA4P78363 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC16.45■□□□□ 0.22
ABCA4P78363 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.45■□□□□ 0.22
ABCA4P78363 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC16.45■□□□□ 0.22
ABCA4P78363 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ABCA4P78363 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ABCA4P78363 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ABCA4P78363 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ABCA4P78363 PRELID3A-203ENST00000587735 1694 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ABCA4P78363 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC16.45■□□□□ 0.22
ABCA4P78363 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ABCA4P78363 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC16.45■□□□□ 0.22
ABCA4P78363 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ABCA4P78363 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ABCA4P78363 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.45■□□□□ 0.22
ABCA4P78363 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC16.45■□□□□ 0.22
ABCA4P78363 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.45■□□□□ 0.22
ABCA4P78363 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC16.45■□□□□ 0.22
ABCA4P78363 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.45■□□□□ 0.22
ABCA4P78363 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC16.45■□□□□ 0.22
ABCA4P78363 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
ABCA4P78363 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC16.45■□□□□ 0.22
ABCA4P78363 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ABCA4P78363 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ABCA4P78363 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC16.45■□□□□ 0.22
ABCA4P78363 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC16.45■□□□□ 0.22
ABCA4P78363 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
ABCA4P78363 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
ABCA4P78363 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC16.45■□□□□ 0.22
ABCA4P78363 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ABCA4P78363 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
ABCA4P78363 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ABCA4P78363 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ABCA4P78363 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ABCA4P78363 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
ABCA4P78363 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ABCA4P78363 AC246785.2-201ENST00000432512 513 ntBASIC16.44■□□□□ 0.22
ABCA4P78363 CNP-204ENST00000472031 1019 ntTSL 2 BASIC16.44■□□□□ 0.22
ABCA4P78363 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC16.44■□□□□ 0.22
ABCA4P78363 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC16.44■□□□□ 0.22
ABCA4P78363 KLK8-205ENST00000593490 267 ntTSL 3 BASIC16.44■□□□□ 0.22
ABCA4P78363 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC16.44■□□□□ 0.22
ABCA4P78363 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
ABCA4P78363 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
ABCA4P78363 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC16.44■□□□□ 0.22
ABCA4P78363 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
ABCA4P78363 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
ABCA4P78363 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms