Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.93■□□□□ 0.62
LIMK1P53667 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
LIMK1P53667 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMK1P53667 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.93■□□□□ 0.62
LIMK1P53667 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
LIMK1P53667 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMK1P53667 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMK1P53667 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.93■□□□□ 0.62
LIMK1P53667 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMK1P53667 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC18.93■□□□□ 0.62
LIMK1P53667 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
LIMK1P53667 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
LIMK1P53667 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
LIMK1P53667 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.93■□□□□ 0.62
LIMK1P53667 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC18.93■□□□□ 0.62
LIMK1P53667 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.93■□□□□ 0.62
LIMK1P53667 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC18.93■□□□□ 0.62
LIMK1P53667 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC18.93■□□□□ 0.62
LIMK1P53667 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMK1P53667 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMK1P53667 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC18.93■□□□□ 0.62
LIMK1P53667 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMK1P53667 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.93■□□□□ 0.62
LIMK1P53667 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.93■□□□□ 0.62
LIMK1P53667 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
LIMK1P53667 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC18.93■□□□□ 0.62
LIMK1P53667 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMK1P53667 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMK1P53667 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIMK1P53667 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMK1P53667 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.92■□□□□ 0.62
LIMK1P53667 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
LIMK1P53667 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMK1P53667 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIMK1P53667 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC18.92■□□□□ 0.62
LIMK1P53667 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC18.92■□□□□ 0.62
LIMK1P53667 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMK1P53667 Telomerase-vert.1-201ENST00000363312 438 ntBASIC18.92■□□□□ 0.62
LIMK1P53667 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC18.92■□□□□ 0.62
LIMK1P53667 UNC93B7-201ENST00000509439 705 ntBASIC18.92■□□□□ 0.62
LIMK1P53667 AC021739.3-201ENST00000557908 855 ntTSL 2 BASIC18.92■□□□□ 0.62
LIMK1P53667 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMK1P53667 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.92■□□□□ 0.62
LIMK1P53667 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC18.92■□□□□ 0.62
LIMK1P53667 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMK1P53667 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC18.92■□□□□ 0.62
LIMK1P53667 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
LIMK1P53667 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC18.92■□□□□ 0.62
LIMK1P53667 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.92■□□□□ 0.62
LIMK1P53667 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC18.91■□□□□ 0.62
LIMK1P53667 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMK1P53667 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.91■□□□□ 0.62
LIMK1P53667 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMK1P53667 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.91■□□□□ 0.62
LIMK1P53667 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMK1P53667 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMK1P53667 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.91■□□□□ 0.62
LIMK1P53667 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
LIMK1P53667 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMK1P53667 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.91■□□□□ 0.62
LIMK1P53667 SPDYE13P-201ENST00000445314 798 ntBASIC18.91■□□□□ 0.62
LIMK1P53667 NUS1P1-201ENST00000446295 882 ntBASIC18.91■□□□□ 0.62
LIMK1P53667 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.91■□□□□ 0.62
LIMK1P53667 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
LIMK1P53667 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC18.91■□□□□ 0.62
LIMK1P53667 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC18.91■□□□□ 0.62
LIMK1P53667 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMK1P53667 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
LIMK1P53667 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMK1P53667 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.91■□□□□ 0.62
LIMK1P53667 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMK1P53667 KRT16P6-202ENST00000425692 1426 ntBASIC18.91■□□□□ 0.62
LIMK1P53667 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
LIMK1P53667 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
LIMK1P53667 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMK1P53667 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMK1P53667 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMK1P53667 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
LIMK1P53667 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMK1P53667 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
LIMK1P53667 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
LIMK1P53667 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
LIMK1P53667 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC18.9■□□□□ 0.62
LIMK1P53667 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC18.9■□□□□ 0.62
LIMK1P53667 GCSHP2-201ENST00000560971 527 ntBASIC18.9■□□□□ 0.62
LIMK1P53667 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
LIMK1P53667 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIMK1P53667 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
LIMK1P53667 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.9■□□□□ 0.62
LIMK1P53667 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC18.9■□□□□ 0.62
LIMK1P53667 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIMK1P53667 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIMK1P53667 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIMK1P53667 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMK1P53667 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMK1P53667 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMK1P53667 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
LIMK1P53667 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
LIMK1P53667 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
LIMK1P53667 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms