Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC17.51■□□□□ 0.39
RFC3P40938 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
RFC3P40938 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.51■□□□□ 0.39
RFC3P40938 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RFC3P40938 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RFC3P40938 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
RFC3P40938 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
RFC3P40938 ARMC10P1-201ENST00000313754 855 ntBASIC17.51■□□□□ 0.39
RFC3P40938 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RFC3P40938 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC17.51■□□□□ 0.39
RFC3P40938 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC17.51■□□□□ 0.39
RFC3P40938 AC128688.1-201ENST00000487626 519 ntBASIC17.51■□□□□ 0.39
RFC3P40938 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC17.51■□□□□ 0.39
RFC3P40938 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC17.51■□□□□ 0.39
RFC3P40938 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RFC3P40938 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC17.51■□□□□ 0.39
RFC3P40938 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC17.51■□□□□ 0.39
RFC3P40938 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RFC3P40938 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.51■□□□□ 0.39
RFC3P40938 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
RFC3P40938 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
RFC3P40938 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RFC3P40938 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RFC3P40938 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.51■□□□□ 0.39
RFC3P40938 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RFC3P40938 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
RFC3P40938 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RFC3P40938 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFC3P40938 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC17.5■□□□□ 0.39
RFC3P40938 RNF170-205ENST00000526349 1338 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RFC3P40938 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFC3P40938 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
RFC3P40938 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.5■□□□□ 0.39
RFC3P40938 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RFC3P40938 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
RFC3P40938 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFC3P40938 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
RFC3P40938 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.5■□□□□ 0.39
RFC3P40938 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFC3P40938 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC17.5■□□□□ 0.39
RFC3P40938 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFC3P40938 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RFC3P40938 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC17.5■□□□□ 0.39
RFC3P40938 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.5■□□□□ 0.39
RFC3P40938 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFC3P40938 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
RFC3P40938 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.5■□□□□ 0.39
RFC3P40938 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
RFC3P40938 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC17.5■□□□□ 0.39
RFC3P40938 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
RFC3P40938 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RFC3P40938 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
RFC3P40938 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.5■□□□□ 0.39
RFC3P40938 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC17.5■□□□□ 0.39
RFC3P40938 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
RFC3P40938 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFC3P40938 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFC3P40938 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFC3P40938 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.49■□□□□ 0.39
RFC3P40938 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFC3P40938 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.49■□□□□ 0.39
RFC3P40938 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.49■□□□□ 0.39
RFC3P40938 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFC3P40938 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.49■□□□□ 0.39
RFC3P40938 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
RFC3P40938 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
RFC3P40938 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
RFC3P40938 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
RFC3P40938 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFC3P40938 AC104076.2-201ENST00000448912 469 ntBASIC17.49■□□□□ 0.39
RFC3P40938 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.49■□□□□ 0.39
RFC3P40938 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC17.49■□□□□ 0.39
RFC3P40938 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC17.49■□□□□ 0.39
RFC3P40938 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC17.49■□□□□ 0.39
RFC3P40938 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC17.49■□□□□ 0.39
RFC3P40938 AC116562.4-202ENST00000641738 218 ntBASIC17.49■□□□□ 0.39
RFC3P40938 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.49■□□□□ 0.39
RFC3P40938 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.49■□□□□ 0.39
RFC3P40938 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFC3P40938 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
RFC3P40938 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFC3P40938 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFC3P40938 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.49■□□□□ 0.39
RFC3P40938 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFC3P40938 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFC3P40938 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
RFC3P40938 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RFC3P40938 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFC3P40938 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFC3P40938 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC17.48■□□□□ 0.39
RFC3P40938 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC17.48■□□□□ 0.39
RFC3P40938 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
RFC3P40938 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFC3P40938 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
RFC3P40938 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC17.48■□□□□ 0.39
RFC3P40938 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFC3P40938 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
RFC3P40938 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC17.48■□□□□ 0.39
RFC3P40938 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC17.48■□□□□ 0.39
RFC3P40938 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms