Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC23.37■■□□□ 1.33
BRCA1P38398 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
BRCA1P38398 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC23.37■■□□□ 1.33
BRCA1P38398 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC23.37■■□□□ 1.33
BRCA1P38398 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC23.37■■□□□ 1.33
BRCA1P38398 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
BRCA1P38398 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC23.37■■□□□ 1.33
BRCA1P38398 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
BRCA1P38398 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
BRCA1P38398 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
BRCA1P38398 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC23.37■■□□□ 1.33
BRCA1P38398 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
BRCA1P38398 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC23.36■■□□□ 1.33
BRCA1P38398 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
BRCA1P38398 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC23.36■■□□□ 1.33
BRCA1P38398 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC23.36■■□□□ 1.33
BRCA1P38398 AL390719.2-201ENST00000606993 987 ntBASIC23.36■■□□□ 1.33
BRCA1P38398 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
BRCA1P38398 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
BRCA1P38398 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
BRCA1P38398 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
BRCA1P38398 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC23.36■■□□□ 1.33
BRCA1P38398 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC23.36■■□□□ 1.33
BRCA1P38398 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
BRCA1P38398 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC23.36■■□□□ 1.33
BRCA1P38398 AC018712.1-201ENST00000455767 687 ntBASIC23.36■■□□□ 1.33
BRCA1P38398 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC23.36■■□□□ 1.33
BRCA1P38398 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC23.36■■□□□ 1.33
BRCA1P38398 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
BRCA1P38398 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
BRCA1P38398 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC23.36■■□□□ 1.33
BRCA1P38398 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
BRCA1P38398 TLE1-202ENST00000376484 666 ntTSL 3 BASIC23.35■■□□□ 1.33
BRCA1P38398 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
BRCA1P38398 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC23.35■■□□□ 1.33
BRCA1P38398 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC23.35■■□□□ 1.33
BRCA1P38398 COX10-202ENST00000429152 875 ntTSL 2 BASIC23.35■■□□□ 1.33
BRCA1P38398 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC23.35■■□□□ 1.33
BRCA1P38398 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC23.35■■□□□ 1.33
BRCA1P38398 ABBA01031661.1-201ENST00000634362 1253 ntBASIC23.35■■□□□ 1.33
BRCA1P38398 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC23.35■■□□□ 1.33
BRCA1P38398 Z83836.1-201ENST00000624605 1642 ntBASIC23.35■■□□□ 1.33
BRCA1P38398 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
BRCA1P38398 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
BRCA1P38398 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
BRCA1P38398 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
BRCA1P38398 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC23.34■■□□□ 1.33
BRCA1P38398 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC23.34■■□□□ 1.33
BRCA1P38398 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC23.34■■□□□ 1.33
BRCA1P38398 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC23.34■■□□□ 1.33
BRCA1P38398 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC23.34■■□□□ 1.33
BRCA1P38398 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC23.34■■□□□ 1.33
BRCA1P38398 AL592071.1-201ENST00000611956 408 ntBASIC23.34■■□□□ 1.33
BRCA1P38398 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
BRCA1P38398 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
BRCA1P38398 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC23.34■■□□□ 1.33
BRCA1P38398 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC23.34■■□□□ 1.33
BRCA1P38398 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC23.34■■□□□ 1.33
BRCA1P38398 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC23.34■■□□□ 1.33
BRCA1P38398 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC23.34■■□□□ 1.33
BRCA1P38398 POLD2P1-201ENST00000511220 997 ntBASIC23.34■■□□□ 1.33
BRCA1P38398 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC23.34■■□□□ 1.33
BRCA1P38398 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC23.34■■□□□ 1.33
BRCA1P38398 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC23.34■■□□□ 1.33
BRCA1P38398 Z69720.1-201ENST00000601483 472 ntBASIC23.34■■□□□ 1.33
BRCA1P38398 IGHV3OR16-7-201ENST00000604106 360 ntBASIC23.34■■□□□ 1.33
BRCA1P38398 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
BRCA1P38398 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC23.34■■□□□ 1.33
BRCA1P38398 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC23.34■■□□□ 1.33
BRCA1P38398 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC23.34■■□□□ 1.33
BRCA1P38398 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC23.34■■□□□ 1.33
BRCA1P38398 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
BRCA1P38398 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC23.34■■□□□ 1.33
BRCA1P38398 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
BRCA1P38398 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC23.33■■□□□ 1.33
BRCA1P38398 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
BRCA1P38398 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC23.33■■□□□ 1.33
BRCA1P38398 LSM5-204ENST00000409909 740 ntTSL 2 BASIC23.33■■□□□ 1.33
BRCA1P38398 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
BRCA1P38398 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC23.33■■□□□ 1.33
BRCA1P38398 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC23.33■■□□□ 1.33
BRCA1P38398 AP005901.3-202ENST00000581653 237 ntBASIC23.33■■□□□ 1.33
BRCA1P38398 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC23.33■■□□□ 1.33
BRCA1P38398 AC104417.2-201ENST00000562989 1793 ntBASIC23.33■■□□□ 1.33
BRCA1P38398 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC23.33■■□□□ 1.32
BRCA1P38398 GOLGA6L5P-202ENST00000515341 1828 ntBASIC23.33■■□□□ 1.32
BRCA1P38398 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC23.33■■□□□ 1.32
BRCA1P38398 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
BRCA1P38398 FAM220CP-201ENST00000395253 831 ntBASIC23.32■■□□□ 1.32
BRCA1P38398 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC23.32■■□□□ 1.32
BRCA1P38398 KRT18P67-201ENST00000432816 1264 ntBASIC23.32■■□□□ 1.32
BRCA1P38398 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC23.32■■□□□ 1.32
BRCA1P38398 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC23.32■■□□□ 1.32
BRCA1P38398 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC23.32■■□□□ 1.32
BRCA1P38398 ANKRD18DP-204ENST00000455355 1975 ntBASIC23.32■■□□□ 1.32
BRCA1P38398 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
BRCA1P38398 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC23.32■■□□□ 1.32
BRCA1P38398 NSUN5P1-202ENST00000421140 1535 ntBASIC23.32■■□□□ 1.32
BRCA1P38398 NSUN5P2-203ENST00000457352 1529 ntBASIC23.32■■□□□ 1.32
BRCA1P38398 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC23.32■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms