Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A1P20908 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.41■□□□□ 0.54
COL5A1P20908 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
COL5A1P20908 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC18.4■□□□□ 0.54
COL5A1P20908 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A1P20908 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A1P20908 FDX1P1-201ENST00000449115 551 ntBASIC18.4■□□□□ 0.54
COL5A1P20908 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC18.4■□□□□ 0.54
COL5A1P20908 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
COL5A1P20908 AL121672.3-201ENST00000608644 468 ntBASIC18.4■□□□□ 0.54
COL5A1P20908 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A1P20908 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
COL5A1P20908 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
COL5A1P20908 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A1P20908 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC18.4■□□□□ 0.54
COL5A1P20908 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.4■□□□□ 0.54
COL5A1P20908 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A1P20908 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
COL5A1P20908 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
COL5A1P20908 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A1P20908 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
COL5A1P20908 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
COL5A1P20908 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL5A1P20908 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL5A1P20908 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
COL5A1P20908 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC18.39■□□□□ 0.54
COL5A1P20908 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC18.39■□□□□ 0.54
COL5A1P20908 KRT17P6-201ENST00000453795 1220 ntBASIC18.39■□□□□ 0.54
COL5A1P20908 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC18.39■□□□□ 0.54
COL5A1P20908 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC18.39■□□□□ 0.54
COL5A1P20908 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL5A1P20908 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL5A1P20908 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.39■□□□□ 0.53
COL5A1P20908 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL5A1P20908 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL5A1P20908 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
COL5A1P20908 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC18.39■□□□□ 0.53
COL5A1P20908 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.39■□□□□ 0.53
COL5A1P20908 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC18.39■□□□□ 0.53
COL5A1P20908 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL5A1P20908 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL5A1P20908 BX276092.5-203ENST00000456199 560 ntBASIC18.39■□□□□ 0.53
COL5A1P20908 AC092329.2-201ENST00000598402 547 ntBASIC18.39■□□□□ 0.53
COL5A1P20908 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC18.39■□□□□ 0.53
COL5A1P20908 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC18.39■□□□□ 0.53
COL5A1P20908 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.39■□□□□ 0.53
COL5A1P20908 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL5A1P20908 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC18.39■□□□□ 0.53
COL5A1P20908 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL5A1P20908 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.39■□□□□ 0.53
COL5A1P20908 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
COL5A1P20908 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC18.39■□□□□ 0.53
COL5A1P20908 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
COL5A1P20908 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.39■□□□□ 0.53
COL5A1P20908 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.39■□□□□ 0.53
COL5A1P20908 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
COL5A1P20908 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.38■□□□□ 0.53
COL5A1P20908 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL5A1P20908 AC104417.2-201ENST00000562989 1793 ntBASIC18.38■□□□□ 0.53
COL5A1P20908 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A1P20908 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A1P20908 AC004870.1-201ENST00000315132 882 ntBASIC18.38■□□□□ 0.53
COL5A1P20908 AC092597.1-201ENST00000487352 616 ntBASIC18.38■□□□□ 0.53
COL5A1P20908 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC18.38■□□□□ 0.53
COL5A1P20908 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
COL5A1P20908 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
COL5A1P20908 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A1P20908 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC18.38■□□□□ 0.53
COL5A1P20908 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.38■□□□□ 0.53
COL5A1P20908 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A1P20908 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A1P20908 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A1P20908 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A1P20908 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC18.38■□□□□ 0.53
COL5A1P20908 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.38■□□□□ 0.53
COL5A1P20908 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.38■□□□□ 0.53
COL5A1P20908 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
COL5A1P20908 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC18.38■□□□□ 0.53
COL5A1P20908 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A1P20908 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
COL5A1P20908 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A1P20908 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.38■□□□□ 0.53
COL5A1P20908 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A1P20908 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
COL5A1P20908 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC18.38■□□□□ 0.53
COL5A1P20908 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.38■□□□□ 0.53
COL5A1P20908 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A1P20908 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
COL5A1P20908 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A1P20908 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC18.37■□□□□ 0.53
COL5A1P20908 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.37■□□□□ 0.53
COL5A1P20908 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC18.37■□□□□ 0.53
COL5A1P20908 AC092119.3-201ENST00000612618 583 ntBASIC18.37■□□□□ 0.53
COL5A1P20908 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A1P20908 AC016734.2-201ENST00000624325 1377 ntBASIC18.37■□□□□ 0.53
COL5A1P20908 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A1P20908 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A1P20908 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A1P20908 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
COL5A1P20908 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms