Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 Z82202.1-201ENST00000623446 1880 ntBASIC19.06■□□□□ 0.64
MSH3P20585 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
MSH3P20585 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC19.06■□□□□ 0.64
MSH3P20585 TSPY7P-201ENST00000431358 1114 ntBASIC19.06■□□□□ 0.64
MSH3P20585 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.06■□□□□ 0.64
MSH3P20585 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.06■□□□□ 0.64
MSH3P20585 AC026271.3-201ENST00000571884 352 ntBASIC19.06■□□□□ 0.64
MSH3P20585 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.06■□□□□ 0.64
MSH3P20585 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.06■□□□□ 0.64
MSH3P20585 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.06■□□□□ 0.64
MSH3P20585 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.06■□□□□ 0.64
MSH3P20585 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
MSH3P20585 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
MSH3P20585 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH3P20585 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH3P20585 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH3P20585 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
MSH3P20585 SDHAP1-207ENST00000440850 2000 ntBASIC19.05■□□□□ 0.64
MSH3P20585 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC19.05■□□□□ 0.64
MSH3P20585 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH3P20585 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH3P20585 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH3P20585 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
MSH3P20585 MIR4785-201ENST00000585005 73 ntBASIC19.05■□□□□ 0.64
MSH3P20585 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC19.05■□□□□ 0.64
MSH3P20585 AC026471.5-201ENST00000615068 467 ntBASIC19.05■□□□□ 0.64
MSH3P20585 DECR2-212ENST00000627716 352 ntTSL 2 BASIC19.05■□□□□ 0.64
MSH3P20585 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.05■□□□□ 0.64
MSH3P20585 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
MSH3P20585 AC138932.1-201ENST00000534164 6830 ntBASIC19.05■□□□□ 0.64
MSH3P20585 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH3P20585 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH3P20585 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.05■□□□□ 0.64
MSH3P20585 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSH3P20585 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
MSH3P20585 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.05■□□□□ 0.64
MSH3P20585 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.04■□□□□ 0.64
MSH3P20585 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
MSH3P20585 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC19.04■□□□□ 0.64
MSH3P20585 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH3P20585 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.04■□□□□ 0.64
MSH3P20585 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH3P20585 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
MSH3P20585 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
MSH3P20585 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
MSH3P20585 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.04■□□□□ 0.64
MSH3P20585 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC19.04■□□□□ 0.64
MSH3P20585 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.04■□□□□ 0.64
MSH3P20585 NUDT16P1-203ENST00000513809 620 ntBASIC19.04■□□□□ 0.64
MSH3P20585 DHDH-203ENST00000522614 776 ntTSL 5 BASIC19.04■□□□□ 0.64
MSH3P20585 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
MSH3P20585 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH3P20585 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH3P20585 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
MSH3P20585 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH3P20585 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH3P20585 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH3P20585 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSH3P20585 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.03■□□□□ 0.64
MSH3P20585 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH3P20585 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH3P20585 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH3P20585 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.03■□□□□ 0.64
MSH3P20585 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH3P20585 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH3P20585 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
MSH3P20585 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH3P20585 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH3P20585 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH3P20585 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC19.03■□□□□ 0.64
MSH3P20585 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.03■□□□□ 0.64
MSH3P20585 Z85996.1-201ENST00000494644 937 ntBASIC19.03■□□□□ 0.64
MSH3P20585 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH3P20585 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC19.03■□□□□ 0.64
MSH3P20585 MIR4497-201ENST00000583208 89 ntBASIC19.03■□□□□ 0.64
MSH3P20585 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
MSH3P20585 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.03■□□□□ 0.64
MSH3P20585 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.03■□□□□ 0.64
MSH3P20585 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.03■□□□□ 0.64
MSH3P20585 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH3P20585 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH3P20585 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH3P20585 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.03■□□□□ 0.64
MSH3P20585 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.03■□□□□ 0.64
MSH3P20585 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH3P20585 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH3P20585 FSCN1P1-201ENST00000568912 1481 ntBASIC19.03■□□□□ 0.64
MSH3P20585 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
MSH3P20585 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
MSH3P20585 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
MSH3P20585 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms