Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC19.9■□□□□ 0.78
HMGA1P17096 AC009947.2-201ENST00000444014 672 ntBASIC19.9■□□□□ 0.78
HMGA1P17096 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.9■□□□□ 0.78
HMGA1P17096 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC19.9■□□□□ 0.78
HMGA1P17096 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.9■□□□□ 0.78
HMGA1P17096 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC19.9■□□□□ 0.78
HMGA1P17096 ETFA-216ENST00000560726 942 ntTSL 3 BASIC19.9■□□□□ 0.78
HMGA1P17096 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGA1P17096 AC140113.3-201ENST00000605663 199 ntBASIC19.9■□□□□ 0.78
HMGA1P17096 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
HMGA1P17096 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.9■□□□□ 0.78
HMGA1P17096 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGA1P17096 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
HMGA1P17096 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
HMGA1P17096 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGA1P17096 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC19.9■□□□□ 0.78
HMGA1P17096 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC19.9■□□□□ 0.78
HMGA1P17096 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
HMGA1P17096 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
HMGA1P17096 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGA1P17096 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
HMGA1P17096 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGA1P17096 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGA1P17096 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGA1P17096 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
HMGA1P17096 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC19.89■□□□□ 0.77
HMGA1P17096 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC19.89■□□□□ 0.77
HMGA1P17096 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC19.89■□□□□ 0.77
HMGA1P17096 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
HMGA1P17096 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC19.89■□□□□ 0.77
HMGA1P17096 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC19.89■□□□□ 0.77
HMGA1P17096 MED25-212ENST00000618715 1467 ntTSL 5 BASIC19.89■□□□□ 0.77
HMGA1P17096 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC19.89■□□□□ 0.77
HMGA1P17096 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC19.89■□□□□ 0.77
HMGA1P17096 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGA1P17096 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.88■□□□□ 0.77
HMGA1P17096 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HMGA1P17096 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC19.88■□□□□ 0.77
HMGA1P17096 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
HMGA1P17096 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGA1P17096 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC19.88■□□□□ 0.77
HMGA1P17096 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HMGA1P17096 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGA1P17096 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
HMGA1P17096 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.88■□□□□ 0.77
HMGA1P17096 AC092647.4-201ENST00000457211 535 ntBASIC19.88■□□□□ 0.77
HMGA1P17096 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGA1P17096 CLN6-204ENST00000564752 900 ntTSL 3 BASIC19.88■□□□□ 0.77
HMGA1P17096 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGA1P17096 NEK4P2-201ENST00000580004 1012 ntBASIC19.88■□□□□ 0.77
HMGA1P17096 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC19.88■□□□□ 0.77
HMGA1P17096 CR769767.2-201ENST00000622735 460 ntBASIC19.88■□□□□ 0.77
HMGA1P17096 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
HMGA1P17096 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
HMGA1P17096 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
HMGA1P17096 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.88■□□□□ 0.77
HMGA1P17096 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGA1P17096 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.88■□□□□ 0.77
HMGA1P17096 Z82202.1-201ENST00000623446 1880 ntBASIC19.88■□□□□ 0.77
HMGA1P17096 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGA1P17096 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC19.88■□□□□ 0.77
HMGA1P17096 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGA1P17096 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGA1P17096 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGA1P17096 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.87■□□□□ 0.77
HMGA1P17096 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC19.87■□□□□ 0.77
HMGA1P17096 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
HMGA1P17096 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGA1P17096 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.87■□□□□ 0.77
HMGA1P17096 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.87■□□□□ 0.77
HMGA1P17096 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC19.87■□□□□ 0.77
HMGA1P17096 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGA1P17096 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGA1P17096 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
HMGA1P17096 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGA1P17096 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGA1P17096 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGA1P17096 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGA1P17096 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC19.87■□□□□ 0.77
HMGA1P17096 ILF2-202ENST00000368681 726 ntTSL 2 BASIC19.87■□□□□ 0.77
HMGA1P17096 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGA1P17096 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGA1P17096 HOMER2P1-201ENST00000455653 964 ntBASIC19.87■□□□□ 0.77
HMGA1P17096 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC19.87■□□□□ 0.77
HMGA1P17096 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.87■□□□□ 0.77
HMGA1P17096 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC19.87■□□□□ 0.77
HMGA1P17096 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGA1P17096 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGA1P17096 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
HMGA1P17096 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC19.87■□□□□ 0.77
HMGA1P17096 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.87■□□□□ 0.77
HMGA1P17096 GPAT2P1-201ENST00000444924 1672 ntBASIC19.87■□□□□ 0.77
HMGA1P17096 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGA1P17096 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGA1P17096 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
HMGA1P17096 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
HMGA1P17096 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
HMGA1P17096 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
HMGA1P17096 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
HMGA1P17096 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms