Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TPM1P09493 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TPM1P09493 BID-214ENST00000617586 542 ntTSL 5 BASIC21.1■□□□□ 0.97
TPM1P09493 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.1■□□□□ 0.97
TPM1P09493 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.1■□□□□ 0.97
TPM1P09493 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC21.1■□□□□ 0.97
TPM1P09493 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
TPM1P09493 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
TPM1P09493 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TPM1P09493 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TPM1P09493 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TPM1P09493 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC21.1■□□□□ 0.97
TPM1P09493 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TPM1P09493 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC21.1■□□□□ 0.97
TPM1P09493 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TPM1P09493 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TPM1P09493 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TPM1P09493 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TPM1P09493 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TPM1P09493 AL512625.2-201ENST00000417533 625 ntBASIC21.09■□□□□ 0.97
TPM1P09493 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC21.09■□□□□ 0.97
TPM1P09493 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC21.09■□□□□ 0.97
TPM1P09493 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TPM1P09493 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC21.09■□□□□ 0.97
TPM1P09493 SERP1-205ENST00000487153 657 ntTSL 4 BASIC21.09■□□□□ 0.97
TPM1P09493 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TPM1P09493 ISCU-212ENST00000547005 795 ntTSL 3 BASIC21.09■□□□□ 0.97
TPM1P09493 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
TPM1P09493 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.09■□□□□ 0.97
TPM1P09493 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TPM1P09493 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC21.09■□□□□ 0.97
TPM1P09493 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TPM1P09493 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC21.09■□□□□ 0.97
TPM1P09493 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TPM1P09493 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TPM1P09493 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
TPM1P09493 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TPM1P09493 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TPM1P09493 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TPM1P09493 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TPM1P09493 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC21.08■□□□□ 0.97
TPM1P09493 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TPM1P09493 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC21.08■□□□□ 0.97
TPM1P09493 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TPM1P09493 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC21.08■□□□□ 0.97
TPM1P09493 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TPM1P09493 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
TPM1P09493 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TPM1P09493 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TPM1P09493 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
TPM1P09493 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
TPM1P09493 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TPM1P09493 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC21.08■□□□□ 0.97
TPM1P09493 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.08■□□□□ 0.97
TPM1P09493 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC21.08■□□□□ 0.97
TPM1P09493 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TPM1P09493 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
TPM1P09493 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC21.08■□□□□ 0.96
TPM1P09493 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
TPM1P09493 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
TPM1P09493 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
TPM1P09493 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TPM1P09493 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.08■□□□□ 0.96
TPM1P09493 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
TPM1P09493 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TPM1P09493 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TPM1P09493 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TPM1P09493 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TPM1P09493 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
TPM1P09493 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TPM1P09493 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC21.07■□□□□ 0.96
TPM1P09493 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TPM1P09493 KRT18P5-201ENST00000436075 1291 ntBASIC21.07■□□□□ 0.96
TPM1P09493 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TPM1P09493 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TPM1P09493 MIR6821-201ENST00000617625 74 ntBASIC21.07■□□□□ 0.96
TPM1P09493 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC21.07■□□□□ 0.96
TPM1P09493 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
TPM1P09493 LTB4R2-202ENST00000528054 3092 ntBASIC21.07■□□□□ 0.96
TPM1P09493 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TPM1P09493 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
TPM1P09493 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TPM1P09493 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TPM1P09493 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TPM1P09493 AC135050.7-201ENST00000624508 2218 ntBASIC21.06■□□□□ 0.96
TPM1P09493 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC21.06■□□□□ 0.96
TPM1P09493 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TPM1P09493 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TPM1P09493 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TPM1P09493 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
TPM1P09493 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC21.06■□□□□ 0.96
TPM1P09493 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
TPM1P09493 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
TPM1P09493 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TPM1P09493 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TPM1P09493 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TPM1P09493 GPX1P1-201ENST00000388829 606 ntBASIC21.06■□□□□ 0.96
TPM1P09493 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TPM1P09493 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TPM1P09493 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms