Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HOXC4P09017 TEX21P-204ENST00000641479 1693 ntBASIC18.71■□□□□ 0.59
HOXC4P09017 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HOXC4P09017 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
HOXC4P09017 AP000523.1-201ENST00000398242 1049 ntBASIC18.71■□□□□ 0.59
HOXC4P09017 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HOXC4P09017 FAM8A6P-201ENST00000407496 1135 ntBASIC18.71■□□□□ 0.59
HOXC4P09017 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.71■□□□□ 0.59
HOXC4P09017 YBX1P2-201ENST00000489612 999 ntBASIC18.71■□□□□ 0.59
HOXC4P09017 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HOXC4P09017 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC18.71■□□□□ 0.59
HOXC4P09017 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.71■□□□□ 0.59
HOXC4P09017 AC139887.4-201ENST00000607877 719 ntBASIC18.71■□□□□ 0.59
HOXC4P09017 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
HOXC4P09017 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.71■□□□□ 0.59
HOXC4P09017 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HOXC4P09017 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC18.71■□□□□ 0.59
HOXC4P09017 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC18.71■□□□□ 0.59
HOXC4P09017 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HOXC4P09017 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
HOXC4P09017 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
HOXC4P09017 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
HOXC4P09017 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.71■□□□□ 0.59
HOXC4P09017 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HOXC4P09017 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
HOXC4P09017 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.71■□□□□ 0.59
HOXC4P09017 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.71■□□□□ 0.58
HOXC4P09017 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXC4P09017 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXC4P09017 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXC4P09017 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
HOXC4P09017 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
HOXC4P09017 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
HOXC4P09017 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC18.7■□□□□ 0.58
HOXC4P09017 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HOXC4P09017 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXC4P09017 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HOXC4P09017 TSPY5P-201ENST00000426936 936 ntBASIC18.7■□□□□ 0.58
HOXC4P09017 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC18.7■□□□□ 0.58
HOXC4P09017 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HOXC4P09017 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC18.7■□□□□ 0.58
HOXC4P09017 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.7■□□□□ 0.58
HOXC4P09017 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
HOXC4P09017 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.7■□□□□ 0.58
HOXC4P09017 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.7■□□□□ 0.58
HOXC4P09017 WWOX-216ENST00000569818 525 ntBASIC18.7■□□□□ 0.58
HOXC4P09017 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.7■□□□□ 0.58
HOXC4P09017 AC008622.2-201ENST00000617006 1229 ntBASIC18.7■□□□□ 0.58
HOXC4P09017 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXC4P09017 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
HOXC4P09017 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC18.7■□□□□ 0.58
HOXC4P09017 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
HOXC4P09017 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
HOXC4P09017 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC4P09017 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXC4P09017 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC4P09017 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC4P09017 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC4P09017 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXC4P09017 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC4P09017 CD70-202ENST00000423145 881 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXC4P09017 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC18.69■□□□□ 0.58
HOXC4P09017 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC18.69■□□□□ 0.58
HOXC4P09017 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC4P09017 TPM1-226ENST00000560959 925 ntTSL 2 BASIC18.69■□□□□ 0.58
HOXC4P09017 MIR4674-201ENST00000582457 87 ntBASIC18.69■□□□□ 0.58
HOXC4P09017 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC4P09017 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC4P09017 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC4P09017 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.69■□□□□ 0.58
HOXC4P09017 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC4P09017 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC4P09017 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
HOXC4P09017 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
HOXC4P09017 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
HOXC4P09017 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.68■□□□□ 0.58
HOXC4P09017 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.68■□□□□ 0.58
HOXC4P09017 HS2ST1-202ENST00000370551 1585 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC4P09017 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC18.68■□□□□ 0.58
HOXC4P09017 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
HOXC4P09017 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC4P09017 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC4P09017 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC4P09017 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC4P09017 ARMC10P1-201ENST00000313754 855 ntBASIC18.68■□□□□ 0.58
HOXC4P09017 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC18.68■□□□□ 0.58
HOXC4P09017 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC18.68■□□□□ 0.58
HOXC4P09017 AC022616.7-201ENST00000525383 220 ntBASIC18.68■□□□□ 0.58
HOXC4P09017 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
HOXC4P09017 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC18.68■□□□□ 0.58
HOXC4P09017 NT5C-211ENST00000582170 653 ntTSL 3 BASIC18.68■□□□□ 0.58
HOXC4P09017 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC18.68■□□□□ 0.58
HOXC4P09017 AC140113.3-201ENST00000605663 199 ntBASIC18.68■□□□□ 0.58
HOXC4P09017 AC011558.1-201ENST00000623459 338 ntBASIC18.68■□□□□ 0.58
HOXC4P09017 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC4P09017 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
HOXC4P09017 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
HOXC4P09017 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC4P09017 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
HOXC4P09017 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms