Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 GPX1P1-201ENST00000388829 606 ntBASIC22.27■■□□□ 1.16
PRPF40AO75400 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
PRPF40AO75400 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PRPF40AO75400 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
PRPF40AO75400 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
PRPF40AO75400 TFP1-202ENST00000475455 1573 ntBASIC22.27■■□□□ 1.16
PRPF40AO75400 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
PRPF40AO75400 AC133552.2-202ENST00000575694 574 ntBASIC22.27■■□□□ 1.16
PRPF40AO75400 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC22.27■■□□□ 1.16
PRPF40AO75400 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PRPF40AO75400 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PRPF40AO75400 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
PRPF40AO75400 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
PRPF40AO75400 IGFALS-202ENST00000415638 2136 ntTSL 2 BASIC22.27■■□□□ 1.15
PRPF40AO75400 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.15
PRPF40AO75400 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
PRPF40AO75400 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.15
PRPF40AO75400 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
PRPF40AO75400 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
PRPF40AO75400 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC22.26■■□□□ 1.15
PRPF40AO75400 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC22.26■■□□□ 1.15
PRPF40AO75400 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PRPF40AO75400 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
PRPF40AO75400 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PRPF40AO75400 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PRPF40AO75400 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PRPF40AO75400 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC22.26■■□□□ 1.15
PRPF40AO75400 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC22.26■■□□□ 1.15
PRPF40AO75400 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
PRPF40AO75400 IRX1P1-201ENST00000438849 1838 ntBASIC22.26■■□□□ 1.15
PRPF40AO75400 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PRPF40AO75400 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC22.26■■□□□ 1.15
PRPF40AO75400 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PRPF40AO75400 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC22.26■■□□□ 1.15
PRPF40AO75400 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
PRPF40AO75400 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
PRPF40AO75400 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
PRPF40AO75400 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC22.26■■□□□ 1.15
PRPF40AO75400 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
PRPF40AO75400 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
PRPF40AO75400 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
PRPF40AO75400 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
PRPF40AO75400 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PRPF40AO75400 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
PRPF40AO75400 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PRPF40AO75400 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC22.25■■□□□ 1.15
PRPF40AO75400 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC22.25■■□□□ 1.15
PRPF40AO75400 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PRPF40AO75400 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC22.25■■□□□ 1.15
PRPF40AO75400 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PRPF40AO75400 AL512625.2-201ENST00000417533 625 ntBASIC22.25■■□□□ 1.15
PRPF40AO75400 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC22.25■■□□□ 1.15
PRPF40AO75400 AC068880.1-201ENST00000507289 2297 ntBASIC22.25■■□□□ 1.15
PRPF40AO75400 EIF2B5-201ENST00000273783 2655 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PRPF40AO75400 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC22.25■■□□□ 1.15
PRPF40AO75400 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PRPF40AO75400 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
PRPF40AO75400 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
PRPF40AO75400 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC22.25■■□□□ 1.15
PRPF40AO75400 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
PRPF40AO75400 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PRPF40AO75400 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC22.25■■□□□ 1.15
PRPF40AO75400 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC22.25■■□□□ 1.15
PRPF40AO75400 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
PRPF40AO75400 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
PRPF40AO75400 BOD1L2-201ENST00000585477 3239 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
PRPF40AO75400 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PRPF40AO75400 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC22.24■■□□□ 1.15
PRPF40AO75400 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PRPF40AO75400 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PRPF40AO75400 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC22.24■■□□□ 1.15
PRPF40AO75400 AL121832.2-201ENST00000610979 668 ntBASIC22.24■■□□□ 1.15
PRPF40AO75400 AL589743.5-201ENST00000616611 1050 ntBASIC22.24■■□□□ 1.15
PRPF40AO75400 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PRPF40AO75400 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
PRPF40AO75400 AC138932.1-201ENST00000534164 6830 ntBASIC22.24■■□□□ 1.15
PRPF40AO75400 PCOLCE-AS1-201ENST00000442166 2537 ntTSL 2 BASIC22.24■■□□□ 1.15
PRPF40AO75400 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PRPF40AO75400 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC22.24■■□□□ 1.15
PRPF40AO75400 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PRPF40AO75400 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC22.24■■□□□ 1.15
PRPF40AO75400 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PRPF40AO75400 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
PRPF40AO75400 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
PRPF40AO75400 NOC2LP2-201ENST00000407594 1944 ntBASIC22.23■■□□□ 1.15
PRPF40AO75400 CHRAC1-201ENST00000220913 2488 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PRPF40AO75400 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC22.23■■□□□ 1.15
PRPF40AO75400 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
PRPF40AO75400 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
PRPF40AO75400 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PRPF40AO75400 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PRPF40AO75400 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
PRPF40AO75400 MOK-233ENST00000524214 1539 ntTSL 2 BASIC22.23■■□□□ 1.15
PRPF40AO75400 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
PRPF40AO75400 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC22.23■■□□□ 1.15
PRPF40AO75400 AC083906.2-201ENST00000511578 360 ntBASIC22.23■■□□□ 1.15
PRPF40AO75400 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC22.23■■□□□ 1.15
PRPF40AO75400 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC22.23■■□□□ 1.15
PRPF40AO75400 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
PRPF40AO75400 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms