Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC18.72■□□□□ 0.59
SDC3O75056 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDC3O75056 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SDC3O75056 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDC3O75056 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDC3O75056 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDC3O75056 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC18.72■□□□□ 0.59
SDC3O75056 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.72■□□□□ 0.59
SDC3O75056 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDC3O75056 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SDC3O75056 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC18.72■□□□□ 0.59
SDC3O75056 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC3O75056 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SDC3O75056 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC3O75056 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC3O75056 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC3O75056 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC3O75056 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC3O75056 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC3O75056 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC3O75056 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC3O75056 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.71■□□□□ 0.59
SDC3O75056 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SDC3O75056 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SDC3O75056 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SDC3O75056 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC18.71■□□□□ 0.59
SDC3O75056 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC18.71■□□□□ 0.59
SDC3O75056 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC3O75056 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC3O75056 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC18.71■□□□□ 0.59
SDC3O75056 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SDC3O75056 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SDC3O75056 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SDC3O75056 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC3O75056 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.71■□□□□ 0.59
SDC3O75056 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SDC3O75056 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SDC3O75056 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SDC3O75056 AC112907.3-201ENST00000577781 2400 ntBASIC18.71■□□□□ 0.59
SDC3O75056 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
SDC3O75056 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC18.7■□□□□ 0.58
SDC3O75056 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
SDC3O75056 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC18.7■□□□□ 0.58
SDC3O75056 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SDC3O75056 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC18.7■□□□□ 0.58
SDC3O75056 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC18.7■□□□□ 0.58
SDC3O75056 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SDC3O75056 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SDC3O75056 SNX5-210ENST00000481323 562 ntTSL 3 BASIC18.7■□□□□ 0.58
SDC3O75056 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
SDC3O75056 AC008622.2-201ENST00000617006 1229 ntBASIC18.7■□□□□ 0.58
SDC3O75056 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SDC3O75056 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SDC3O75056 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SDC3O75056 TBC1D3P2-202ENST00000577902 1649 ntBASIC18.7■□□□□ 0.58
SDC3O75056 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.7■□□□□ 0.58
SDC3O75056 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC18.7■□□□□ 0.58
SDC3O75056 AC005332.1-201ENST00000577698 1310 ntBASIC18.7■□□□□ 0.58
SDC3O75056 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SDC3O75056 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SDC3O75056 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SDC3O75056 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC3O75056 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC3O75056 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC3O75056 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
SDC3O75056 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC18.69■□□□□ 0.58
SDC3O75056 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC3O75056 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC3O75056 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC3O75056 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC3O75056 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
SDC3O75056 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC3O75056 AC112907.2-201ENST00000448639 330 ntBASIC18.69■□□□□ 0.58
SDC3O75056 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC18.69■□□□□ 0.58
SDC3O75056 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC18.69■□□□□ 0.58
SDC3O75056 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.69■□□□□ 0.58
SDC3O75056 MIR4674-201ENST00000582457 87 ntBASIC18.69■□□□□ 0.58
SDC3O75056 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC18.69■□□□□ 0.58
SDC3O75056 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC3O75056 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SDC3O75056 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
SDC3O75056 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SDC3O75056 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
SDC3O75056 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.68■□□□□ 0.58
SDC3O75056 AC104417.2-201ENST00000562989 1793 ntBASIC18.68■□□□□ 0.58
SDC3O75056 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 PHB2-202ENST00000440277 996 ntTSL 5 BASIC18.68■□□□□ 0.58
SDC3O75056 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SDC3O75056 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.68■□□□□ 0.58
SDC3O75056 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC18.68■□□□□ 0.58
SDC3O75056 GCSHP2-201ENST00000560971 527 ntBASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms