Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CBX4O00257 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19.6■□□□□ 0.73
CBX4O00257 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.6■□□□□ 0.73
CBX4O00257 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CBX4O00257 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CBX4O00257 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
CBX4O00257 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CBX4O00257 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CBX4O00257 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.59■□□□□ 0.73
CBX4O00257 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC19.59■□□□□ 0.73
CBX4O00257 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC19.59■□□□□ 0.73
CBX4O00257 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.59■□□□□ 0.73
CBX4O00257 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CBX4O00257 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CBX4O00257 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CBX4O00257 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CBX4O00257 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CBX4O00257 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
CBX4O00257 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CBX4O00257 TMPOP1-202ENST00000424642 1267 ntBASIC19.59■□□□□ 0.73
CBX4O00257 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.59■□□□□ 0.73
CBX4O00257 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CBX4O00257 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CBX4O00257 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
CBX4O00257 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CBX4O00257 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
CBX4O00257 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.59■□□□□ 0.73
CBX4O00257 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CBX4O00257 KRT8P9-201ENST00000558927 1449 ntBASIC19.59■□□□□ 0.73
CBX4O00257 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
CBX4O00257 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.58■□□□□ 0.73
CBX4O00257 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
CBX4O00257 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC19.58■□□□□ 0.73
CBX4O00257 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CBX4O00257 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CBX4O00257 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CBX4O00257 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
CBX4O00257 AC007952.6-201ENST00000573168 2673 ntBASIC19.58■□□□□ 0.73
CBX4O00257 AC003957.1-201ENST00000625108 2673 ntBASIC19.58■□□□□ 0.73
CBX4O00257 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CBX4O00257 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CBX4O00257 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CBX4O00257 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.58■□□□□ 0.72
CBX4O00257 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC19.58■□□□□ 0.72
CBX4O00257 CYGB-204ENST00000589342 815 ntTSL 3 BASIC19.58■□□□□ 0.72
CBX4O00257 GLDC-219ENST00000640208 420 ntTSL 2 BASIC19.58■□□□□ 0.72
CBX4O00257 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CBX4O00257 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
CBX4O00257 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.72
CBX4O00257 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
CBX4O00257 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC19.58■□□□□ 0.72
CBX4O00257 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CBX4O00257 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CBX4O00257 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CBX4O00257 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CBX4O00257 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
CBX4O00257 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CBX4O00257 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CBX4O00257 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CBX4O00257 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
CBX4O00257 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.57■□□□□ 0.72
CBX4O00257 MFAP1P1-201ENST00000442257 1255 ntBASIC19.57■□□□□ 0.72
CBX4O00257 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.57■□□□□ 0.72
CBX4O00257 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.57■□□□□ 0.72
CBX4O00257 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
CBX4O00257 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CBX4O00257 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CBX4O00257 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CBX4O00257 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC19.56■□□□□ 0.72
CBX4O00257 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CBX4O00257 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.56■□□□□ 0.72
CBX4O00257 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CBX4O00257 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
CBX4O00257 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19.56■□□□□ 0.72
CBX4O00257 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CBX4O00257 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC19.56■□□□□ 0.72
CBX4O00257 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CBX4O00257 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CBX4O00257 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC19.56■□□□□ 0.72
CBX4O00257 AP005242.2-201ENST00000580065 1175 ntBASIC19.56■□□□□ 0.72
CBX4O00257 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC19.56■□□□□ 0.72
CBX4O00257 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.56■□□□□ 0.72
CBX4O00257 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CBX4O00257 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
CBX4O00257 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CBX4O00257 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
CBX4O00257 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CBX4O00257 AC096733.2-201ENST00000609937 1394 ntBASIC19.56■□□□□ 0.72
CBX4O00257 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
CBX4O00257 AC093484.2-201ENST00000580996 2166 ntBASIC19.56■□□□□ 0.72
CBX4O00257 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.56■□□□□ 0.72
CBX4O00257 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CBX4O00257 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.55■□□□□ 0.72
CBX4O00257 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CBX4O00257 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CBX4O00257 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CBX4O00257 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CBX4O00257 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CBX4O00257 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CBX4O00257 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms