Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 AC104076.2-201ENST00000448912 469 ntBASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 KRT18P35-201ENST00000510488 1269 ntBASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 AC006011.2-201ENST00000621313 1158 ntBASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 AL138966.2-201ENST00000621997 464 ntBASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 BAD-201ENST00000309032 929 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 AK4P3-201ENST00000418260 669 ntBASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.19■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 ARMC10P1-201ENST00000313754 855 ntBASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 PHB2-202ENST00000440277 996 ntTSL 5 BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 LINC01238-205ENST00000567549 1107 ntBASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 AC141257.4-201ENST00000634557 245 ntBASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 AC136944.6-201ENST00000634818 245 ntBASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 TREX1-205ENST00000625293 1783 ntBASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 COX11P1-201ENST00000489116 835 ntBASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 SLC11A2-208ENST00000546743 1740 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
C1QTNF3-AMACRE9PGA6 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms