Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A5A8TX70 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A5A8TX70 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
COL6A5A8TX70 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A5A8TX70 CDV3-207ENST00000508481 661 ntTSL 3 BASIC14.89□□□□□ -0.03
COL6A5A8TX70 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC14.89□□□□□ -0.03
COL6A5A8TX70 AP005901.3-202ENST00000581653 237 ntBASIC14.89□□□□□ -0.03
COL6A5A8TX70 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC14.89□□□□□ -0.03
COL6A5A8TX70 AL596442.2-201ENST00000610240 980 ntBASIC14.89□□□□□ -0.03
COL6A5A8TX70 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC14.89□□□□□ -0.03
COL6A5A8TX70 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A5A8TX70 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A5A8TX70 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A5A8TX70 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A5A8TX70 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A5A8TX70 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A5A8TX70 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A5A8TX70 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A5A8TX70 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A5A8TX70 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A5A8TX70 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A5A8TX70 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A5A8TX70 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC14.89□□□□□ -0.03
COL6A5A8TX70 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC14.89□□□□□ -0.03
COL6A5A8TX70 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
COL6A5A8TX70 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC14.89□□□□□ -0.03
COL6A5A8TX70 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A5A8TX70 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A5A8TX70 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC14.89□□□□□ -0.03
COL6A5A8TX70 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A5A8TX70 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A5A8TX70 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
COL6A5A8TX70 AC104109.2-201ENST00000602919 1418 ntBASIC14.88□□□□□ -0.03
COL6A5A8TX70 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC14.88□□□□□ -0.03
COL6A5A8TX70 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC14.88□□□□□ -0.03
COL6A5A8TX70 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC14.88□□□□□ -0.03
COL6A5A8TX70 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
COL6A5A8TX70 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A5A8TX70 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC14.88□□□□□ -0.03
COL6A5A8TX70 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A5A8TX70 PNKD-204ENST00000436005 978 ntTSL 5 BASIC14.88□□□□□ -0.03
COL6A5A8TX70 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC14.88□□□□□ -0.03
COL6A5A8TX70 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
COL6A5A8TX70 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC14.88□□□□□ -0.03
COL6A5A8TX70 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC14.88□□□□□ -0.03
COL6A5A8TX70 AL136038.4-201ENST00000603606 1261 ntBASIC14.88□□□□□ -0.03
COL6A5A8TX70 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
COL6A5A8TX70 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A5A8TX70 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A5A8TX70 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A5A8TX70 TMEM179-206ENST00000616017 1645 ntBASIC14.88□□□□□ -0.03
COL6A5A8TX70 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A5A8TX70 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.88□□□□□ -0.03
COL6A5A8TX70 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC14.88□□□□□ -0.03
COL6A5A8TX70 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A5A8TX70 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
COL6A5A8TX70 TUB-203ENST00000534099 1759 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A5A8TX70 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A5A8TX70 LBH-203ENST00000404397 543 ntTSL 4 BASIC14.87□□□□□ -0.03
COL6A5A8TX70 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A5A8TX70 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A5A8TX70 AC112482.1-201ENST00000492080 688 ntBASIC14.87□□□□□ -0.03
COL6A5A8TX70 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A5A8TX70 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A5A8TX70 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC14.87□□□□□ -0.03
COL6A5A8TX70 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
COL6A5A8TX70 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC14.87□□□□□ -0.03
COL6A5A8TX70 CCDC63-202ENST00000545036 1887 ntAPPRIS ALT2 TSL 2 BASIC14.87□□□□□ -0.03
COL6A5A8TX70 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC14.87□□□□□ -0.03
COL6A5A8TX70 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A5A8TX70 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A5A8TX70 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A5A8TX70 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A5A8TX70 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A5A8TX70 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A5A8TX70 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC14.87□□□□□ -0.03
COL6A5A8TX70 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
COL6A5A8TX70 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A5A8TX70 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC14.86□□□□□ -0.03
COL6A5A8TX70 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A5A8TX70 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A5A8TX70 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A5A8TX70 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC14.86□□□□□ -0.03
COL6A5A8TX70 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC14.86□□□□□ -0.03
COL6A5A8TX70 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC14.86□□□□□ -0.03
COL6A5A8TX70 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC14.86□□□□□ -0.03
COL6A5A8TX70 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A5A8TX70 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC14.86□□□□□ -0.03
COL6A5A8TX70 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC14.86□□□□□ -0.03
COL6A5A8TX70 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC14.86□□□□□ -0.03
COL6A5A8TX70 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC14.86□□□□□ -0.03
COL6A5A8TX70 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC14.86□□□□□ -0.03
COL6A5A8TX70 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC14.86□□□□□ -0.03
COL6A5A8TX70 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC14.86□□□□□ -0.03
COL6A5A8TX70 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A5A8TX70 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC14.86□□□□□ -0.03
COL6A5A8TX70 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
COL6A5A8TX70 AL049840.3-201ENST00000602669 611 ntBASIC14.86□□□□□ -0.03
COL6A5A8TX70 AC012645.4-201ENST00000610691 1061 ntBASIC14.86□□□□□ -0.03
COL6A5A8TX70 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms