Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 RNA5SP118-201ENST00000410385 109 ntBASIC5.53□□□□□ -1.52
USP48Q86UV5 RN7SKP247-201ENST00000411094 308 ntBASIC5.53□□□□□ -1.52
USP48Q86UV5 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC5.53□□□□□ -1.52
USP48Q86UV5 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC5.53□□□□□ -1.52
USP48Q86UV5 KCND3-IT1-201ENST00000439736 376 ntTSL 3 BASIC5.53□□□□□ -1.52
USP48Q86UV5 AC104651.2-201ENST00000447549 528 ntBASIC5.53□□□□□ -1.52
USP48Q86UV5 RPS17P13-201ENST00000448974 407 ntBASIC5.53□□□□□ -1.52
USP48Q86UV5 SNRPGP6-201ENST00000451124 220 ntBASIC5.53□□□□□ -1.52
USP48Q86UV5 AC011998.3-201ENST00000457053 254 ntTSL 3 BASIC5.53□□□□□ -1.52
USP48Q86UV5 UQCRHP4-201ENST00000471686 272 ntBASIC5.53□□□□□ -1.52
USP48Q86UV5 AC021146.3-201ENST00000511911 260 ntBASIC5.53□□□□□ -1.52
USP48Q86UV5 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC5.53□□□□□ -1.52
USP48Q86UV5 SNORA40.12-201ENST00000516329 111 ntBASIC5.53□□□□□ -1.52
USP48Q86UV5 AP000857.1-201ENST00000532151 543 ntBASIC5.53□□□□□ -1.52
USP48Q86UV5 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC5.53□□□□□ -1.52
USP48Q86UV5 HIF1AP1-201ENST00000553642 175 ntBASIC5.53□□□□□ -1.52
USP48Q86UV5 RPL21P12-201ENST00000559810 515 ntBASIC5.53□□□□□ -1.52
USP48Q86UV5 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC5.53□□□□□ -1.52
USP48Q86UV5 AC115621.1-201ENST00000604653 858 ntBASIC5.53□□□□□ -1.52
USP48Q86UV5 SNX18P1Y-201ENST00000616231 511 ntBASIC5.53□□□□□ -1.52
USP48Q86UV5 MIR3653-201ENST00000625572 110 ntBASIC5.53□□□□□ -1.52
USP48Q86UV5 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
USP48Q86UV5 UGT2B7-201ENST00000305231 1887 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
USP48Q86UV5 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
USP48Q86UV5 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
USP48Q86UV5 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
USP48Q86UV5 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC5.53□□□□□ -1.52
USP48Q86UV5 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.52□□□□□ -1.53
USP48Q86UV5 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC5.52□□□□□ -1.53
USP48Q86UV5 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC5.52□□□□□ -1.53
USP48Q86UV5 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
USP48Q86UV5 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.52□□□□□ -1.53
USP48Q86UV5 AL139811.1-201ENST00000424779 2299 ntBASIC5.52□□□□□ -1.53
USP48Q86UV5 OR52B1P-201ENST00000316506 909 ntBASIC5.52□□□□□ -1.53
USP48Q86UV5 Y_RNA.535-201ENST00000384612 99 ntBASIC5.52□□□□□ -1.53
USP48Q86UV5 MIR1-2-201ENST00000384961 85 ntBASIC5.52□□□□□ -1.53
USP48Q86UV5 RNU6-1009P-201ENST00000390996 107 ntBASIC5.52□□□□□ -1.53
USP48Q86UV5 RNU6-1158P-201ENST00000391167 107 ntBASIC5.52□□□□□ -1.53
USP48Q86UV5 AL353612.1-201ENST00000428769 465 ntTSL 3 BASIC5.52□□□□□ -1.53
USP48Q86UV5 RPS15AP9-201ENST00000439856 381 ntBASIC5.52□□□□□ -1.53
USP48Q86UV5 AC016691.1-201ENST00000441321 413 ntBASIC5.52□□□□□ -1.53
USP48Q86UV5 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.52□□□□□ -1.53
USP48Q86UV5 ACTR3BP4-201ENST00000503033 1244 ntBASIC5.52□□□□□ -1.53
USP48Q86UV5 NAF1-205ENST00000509434 385 ntTSL 3 BASIC5.52□□□□□ -1.53
USP48Q86UV5 PARP4P3-201ENST00000510265 317 ntBASIC5.52□□□□□ -1.53
USP48Q86UV5 RNU6-835P-201ENST00000516974 104 ntBASIC5.52□□□□□ -1.53
USP48Q86UV5 PDCD5P1-201ENST00000543528 309 ntBASIC5.52□□□□□ -1.53
USP48Q86UV5 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.52□□□□□ -1.53
USP48Q86UV5 MIR4444-1-201ENST00000581696 74 ntBASIC5.52□□□□□ -1.53
USP48Q86UV5 MIR4444-2-201ENST00000584390 74 ntBASIC5.52□□□□□ -1.53
USP48Q86UV5 LINC01028-202ENST00000588782 458 ntTSL 3 BASIC5.52□□□□□ -1.53
USP48Q86UV5 TTN-AS1-228ENST00000589234 751 ntTSL 5 BASIC5.52□□□□□ -1.53
USP48Q86UV5 GLUD1P4-201ENST00000590914 418 ntBASIC5.52□□□□□ -1.53
USP48Q86UV5 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC5.52□□□□□ -1.53
USP48Q86UV5 NXPH1-205ENST00000602349 1953 ntBASIC5.52□□□□□ -1.53
USP48Q86UV5 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC5.52□□□□□ -1.53
USP48Q86UV5 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
USP48Q86UV5 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
USP48Q86UV5 CARF-203ENST00000414439 2099 ntTSL 2 BASIC5.52□□□□□ -1.53
USP48Q86UV5 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
USP48Q86UV5 OBSCN-204ENST00000366707 26772 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
USP48Q86UV5 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.52□□□□□ -1.53
USP48Q86UV5 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
USP48Q86UV5 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC5.51□□□□□ -1.53
USP48Q86UV5 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
USP48Q86UV5 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
USP48Q86UV5 FAM91A3P-201ENST00000456826 2544 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 GPR183-201ENST00000376414 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
USP48Q86UV5 MFF-206ENST00000392059 1710 ntTSL 5 BASIC5.51□□□□□ -1.53
USP48Q86UV5 AP000542.2-201ENST00000623199 6179 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC5.51□□□□□ -1.53
USP48Q86UV5 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
USP48Q86UV5 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.51□□□□□ -1.53
USP48Q86UV5 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
USP48Q86UV5 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
USP48Q86UV5 RNU6-451P-201ENST00000362921 107 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 RNU5E-8P-201ENST00000363502 116 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 U3.11-201ENST00000364476 212 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 SNORA70.4-201ENST00000365509 134 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 SNORA69-201ENST00000383895 132 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 RNU2-47P-201ENST00000410649 186 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC5.51□□□□□ -1.53
USP48Q86UV5 AC011998.1-201ENST00000433403 117 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 AL132765.1-201ENST00000434165 553 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 RPL29P29-201ENST00000448725 423 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 RNU7-63P-201ENST00000459054 62 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 RN7SL542P-201ENST00000467147 294 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 HMGB1P25-201ENST00000468402 607 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC5.51□□□□□ -1.53
USP48Q86UV5 LINC00492-201ENST00000504436 593 ntTSL 3 BASIC5.51□□□□□ -1.53
USP48Q86UV5 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
USP48Q86UV5 CENPUP1-201ENST00000526649 1202 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 AP000827.1-201ENST00000527814 258 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC5.51□□□□□ -1.53
USP48Q86UV5 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC5.51□□□□□ -1.53
USP48Q86UV5 AC123904.3-201ENST00000547218 814 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 RPL21P7-201ENST00000557463 483 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.51□□□□□ -1.53
USP48Q86UV5 AL035413.2-201ENST00000604801 525 ntBASIC5.51□□□□□ -1.53
USP48Q86UV5 BNIP3P10-201ENST00000605360 577 ntBASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 114.7 ms