Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC4.58□□□□□ -1.68
SMARCA1P28370 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC4.58□□□□□ -1.68
SMARCA1P28370 AC107954.1-201ENST00000565906 727 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 MIR4801-201ENST00000582704 82 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 CKS1BP3-201ENST00000600888 237 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 AL359999.1-201ENST00000604513 294 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 IGHV3-29-201ENST00000604817 344 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 AL592436.1-201ENST00000605135 558 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 uc_338.32-201ENST00000615087 172 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 MIR6500-201ENST00000622700 86 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 OR5H6-203ENST00000642105 978 ntBASIC4.58□□□□□ -1.68
SMARCA1P28370 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
SMARCA1P28370 IFI16-208ENST00000448393 2245 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
SMARCA1P28370 LINC01566-202ENST00000569242 2801 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SMARCA1P28370 POU2F1-204ENST00000367866 13905 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
SMARCA1P28370 SCFD1-207ENST00000544052 2058 ntTSL 2 BASIC4.57□□□□□ -1.68
SMARCA1P28370 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
SMARCA1P28370 AC092125.1-201ENST00000562568 1995 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 RNU6-1207P-201ENST00000384343 107 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 MIR1183-201ENST00000408856 89 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 RNU6-628P-201ENST00000410675 107 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 RNU2-15P-201ENST00000410692 191 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 MTND1P21-201ENST00000412991 285 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 SPA17P1-201ENST00000416656 452 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 EIF1P1-201ENST00000421436 341 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC4.57□□□□□ -1.68
SMARCA1P28370 AC011742.1-201ENST00000431448 434 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 KCTD9P3-201ENST00000434597 1169 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC4.57□□□□□ -1.68
SMARCA1P28370 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC4.57□□□□□ -1.68
SMARCA1P28370 RPS20P32-201ENST00000456044 356 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 RPS3AP17-201ENST00000472594 777 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 AC126182.1-201ENST00000478134 357 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC4.57□□□□□ -1.68
SMARCA1P28370 FTH1P9-201ENST00000513251 355 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 AC108727.1-201ENST00000513802 393 ntTSL 2 BASIC4.57□□□□□ -1.68
SMARCA1P28370 AC022483.1-201ENST00000514020 567 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 RNU6-201P-201ENST00000517100 61 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC4.57□□□□□ -1.68
SMARCA1P28370 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC4.57□□□□□ -1.68
SMARCA1P28370 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC4.57□□□□□ -1.68
SMARCA1P28370 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC4.57□□□□□ -1.68
SMARCA1P28370 AC034268.2-201ENST00000571784 482 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 AC090615.1-201ENST00000577519 154 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 AC093227.2-201ENST00000589357 285 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 AL020997.2-201ENST00000602607 184 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 AL022154.1-201ENST00000604698 785 ntBASIC4.57□□□□□ -1.68
SMARCA1P28370 ATXN3L-202ENST00000622204 837 ntTSL 5 BASIC4.57□□□□□ -1.68
SMARCA1P28370 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SMARCA1P28370 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SMARCA1P28370 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.56□□□□□ -1.68
SMARCA1P28370 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
SMARCA1P28370 EFHC1-205ENST00000538167 5308 ntTSL 5 BASIC4.56□□□□□ -1.68
SMARCA1P28370 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.56□□□□□ -1.68
SMARCA1P28370 NR3C1-206ENST00000424646 4591 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SMARCA1P28370 FARSBP1-201ENST00000435808 1778 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 ZNF107-203ENST00000395391 6094 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SMARCA1P28370 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.56□□□□□ -1.68
SMARCA1P28370 OR4G2P-201ENST00000328113 903 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SMARCA1P28370 RNA5SP258-201ENST00000362750 119 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
SMARCA1P28370 RNU6-761P-201ENST00000384148 107 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 Y_RNA.493-201ENST00000384422 102 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 CCNG1P1-201ENST00000406783 885 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 FCF1P10-201ENST00000407590 479 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 AL359704.1-201ENST00000411586 781 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC4.56□□□□□ -1.68
SMARCA1P28370 USP9YP36-201ENST00000424581 829 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 EZH2P1-201ENST00000431167 291 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 RABEPKP1-201ENST00000440529 1026 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 AC135371.1-201ENST00000446964 453 ntTSL 2 BASIC4.56□□□□□ -1.68
SMARCA1P28370 NPM1P49-201ENST00000448027 714 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 AL451050.1-201ENST00000450126 415 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 OFD1P4Y-201ENST00000455273 1179 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC4.56□□□□□ -1.68
SMARCA1P28370 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC4.56□□□□□ -1.68
SMARCA1P28370 RPL21P11-201ENST00000461458 483 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 AC004924.1-201ENST00000480160 781 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 UMAD1-204ENST00000482067 569 ntTSL 5 BASIC4.56□□□□□ -1.68
SMARCA1P28370 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC4.56□□□□□ -1.68
SMARCA1P28370 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
SMARCA1P28370 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.56□□□□□ -1.68
SMARCA1P28370 DEFB108A-201ENST00000530110 222 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC4.56□□□□□ -1.68
SMARCA1P28370 AC123904.2-201ENST00000548059 300 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC4.56□□□□□ -1.68
SMARCA1P28370 GNRHR2P1-201ENST00000555315 631 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 MEG8-218ENST00000556720 456 ntTSL 3 BASIC4.56□□□□□ -1.68
SMARCA1P28370 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC4.56□□□□□ -1.68
SMARCA1P28370 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC4.56□□□□□ -1.68
SMARCA1P28370 AL669831.4-202ENST00000590817 238 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 AL606490.9-201ENST00000603331 271 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 RBM11P1-201ENST00000604951 799 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 AC012603.1-201ENST00000606424 528 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 AL391813.2-201ENST00000609113 322 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 OR10AB1P-201ENST00000609613 938 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 MIR6875-201ENST00000617506 72 ntBASIC4.56□□□□□ -1.68
SMARCA1P28370 AC072046.2-201ENST00000618366 268 ntBASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms