RNA–Protein interactions for RNA: ENST00000427157.1

LINC02541-201, Transcript of long intergenic non-protein coding RNA 2541, humanhuman

TSL 3 BASIC

Gene LINC02541, Length 327 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC02541-201ENST00000427157 AEBP2Q6ZN18 517 aaPredicted RBP24.74■■□□□ 1.55
LINC02541-201ENST00000427157 CHIC1Q5VXU3 224 aa23.68■■□□□ 1.38
LINC02541-201ENST00000427157 SENP3Q9H4L4 574 aaPredicted RBP21.04■□□□□ 0.96
LINC02541-201ENST00000427157 PHF23Q9BUL5 403 aaPredicted RBP20.79■□□□□ 0.92
LINC02541-201ENST00000427157 FOXD1Q16676 465 aa19.59■□□□□ 0.73
LINC02541-201ENST00000427157 PLPPR3Q6T4P5 718 aa19.01■□□□□ 0.63
LINC02541-201ENST00000427157 PPP6R1Q9UPN7 881 aa18.5■□□□□ 0.55
LINC02541-201ENST00000427157 ADRA2BP18089 450 aa18.44■□□□□ 0.54
LINC02541-201ENST00000427157 PIAS4Q8N2W9 510 aaPredicted RBP18.36■□□□□ 0.53
LINC02541-201ENST00000427157 MSH5O43196 834 aa18.23■□□□□ 0.51
LINC02541-201ENST00000427157 POTEDQ86YR6 584 aa17.45■□□□□ 0.38
LINC02541-201ENST00000427157 MAPK8IP2Q13387 824 aaPredicted RBP16.88■□□□□ 0.29
LINC02541-201ENST00000427157 SCAF1Q9H7N4 1312 aaKnown RBP16.83■□□□□ 0.28
LINC02541-201ENST00000427157 DMRT2Q9Y5R5 561 aa16.72■□□□□ 0.27
LINC02541-201ENST00000427157 PPP4R3CPQ6ZMV5 832 aa16.69■□□□□ 0.26
LINC02541-201ENST00000427157 CNKSR2Q8WXI2 1034 aa16.32■□□□□ 0.2
LINC02541-201ENST00000427157 HOXD11P31277 338 aaPredicted RBP16.19■□□□□ 0.18
LINC02541-201ENST00000427157 RNF216Q9NWF9 866 aaPredicted RBP16.12■□□□□ 0.17
LINC02541-201ENST00000427157 NCBP3Q53F19 620 aaKnown RBP16.09■□□□□ 0.17
LINC02541-201ENST00000427157 DCAF8L1A6NGE4 600 aa16.02■□□□□ 0.16
LINC02541-201ENST00000427157 NPM3O75607 178 aaKnown RBP15.9■□□□□ 0.14
LINC02541-201ENST00000427157 KCNA4P22459 653 aa15.8■□□□□ 0.12
LINC02541-201ENST00000427157 RNF39Q9H2S5 420 aa15.59■□□□□ 0.09
LINC02541-201ENST00000427157 DNAJC5BQ9UF47 199 aa15.57■□□□□ 0.08
LINC02541-201ENST00000427157 CACNB1Q02641 598 aaPredicted RBP15.51■□□□□ 0.07
LINC02541-201ENST00000427157 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.42■□□□□ 0.06
LINC02541-201ENST00000427157 C1QBPQ07021 282 aaKnown RBP15.36■□□□□ 0.05
LINC02541-201ENST00000427157 U3KPZ7 1027 aaPredicted RBP15.15■□□□□ 0.02
LINC02541-201ENST00000427157 SLC4A2P04920 1241 aa15.14■□□□□ 0.01
LINC02541-201ENST00000427157 SLC4A1APQ9BWU0 796 aaKnown RBP14.94□□□□□ -0.02
LINC02541-201ENST00000427157 SPINK5Q9NQ38 1064 aaPredicted RBP14.87□□□□□ -0.03
LINC02541-201ENST00000427157 CAPN15O75808 1086 aa14.8□□□□□ -0.04
LINC02541-201ENST00000427157 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.75□□□□□ -0.05
LINC02541-201ENST00000427157 HNRNPUL2Q1KMD3 747 aaKnown RBP14.75□□□□□ -0.05
LINC02541-201ENST00000427157 APLP2Q06481 763 aa14.7□□□□□ -0.06
LINC02541-201ENST00000427157 MYCNP04198 464 aaPredicted RBP14.69□□□□□ -0.06
LINC02541-201ENST00000427157 SAMD1Q6SPF0 538 aaPredicted RBP14.69□□□□□ -0.06
LINC02541-201ENST00000427157 DSG3P32926 999 aa14.67□□□□□ -0.06
LINC02541-201ENST00000427157 FOXD4L1Q9NU39 408 aa14.66□□□□□ -0.06
LINC02541-201ENST00000427157 TRHP20396 242 aaPredicted RBP14.62□□□□□ -0.07
LINC02541-201ENST00000427157 ZNF219Q9P2Y4 722 aaPredicted RBP14.6□□□□□ -0.07
LINC02541-201ENST00000427157 ZBTB22O15209 634 aa14.56□□□□□ -0.08
LINC02541-201ENST00000427157 ABCB7O75027 752 aa14.5□□□□□ -0.09
LINC02541-201ENST00000427157 ATF5Q9Y2D1 282 aaPredicted RBP14.36□□□□□ -0.11
LINC02541-201ENST00000427157 POLA2Q14181 598 aa14.28□□□□□ -0.12
LINC02541-201ENST00000427157 ATXN8OSP0DMR3 200 aa14.17□□□□□ -0.14
LINC02541-201ENST00000427157 CSRNP3Q8WYN3 585 aa14.06□□□□□ -0.16
LINC02541-201ENST00000427157 EHMT2Q96KQ7 1210 aa14.01□□□□□ -0.17
LINC02541-201ENST00000427157 ZBTB12Q9Y330 459 aaPredicted RBP13.99□□□□□ -0.17
LINC02541-201ENST00000427157 RBM42Q9BTD8 480 aaKnown RBP13.98□□□□□ -0.17
LINC02541-201ENST00000427157 OSCARQ8IYS5 282 aa13.85□□□□□ -0.19
LINC02541-201ENST00000427157 FBLN2P98095 1184 aa13.74□□□□□ -0.21
LINC02541-201ENST00000427157 MKRN4PQ13434 485 aaPredicted RBP13.71□□□□□ -0.21
LINC02541-201ENST00000427157 POTEHQ6S545 545 aa13.71□□□□□ -0.21
LINC02541-201ENST00000427157 AKT1S1Q96B36 256 aa13.7□□□□□ -0.22
LINC02541-201ENST00000427157 CHRDL2Q6WN34 429 aa13.6□□□□□ -0.23
LINC02541-201ENST00000427157 SPDYE2BA6NHP3 402 aa13.59□□□□□ -0.23
LINC02541-201ENST00000427157 SPDYE6P0CI01 402 aa13.59□□□□□ -0.23
LINC02541-201ENST00000427157 SPDYE2Q495Y8 402 aa13.59□□□□□ -0.23
LINC02541-201ENST00000427157 REM2Q8IYK8 340 aaPredicted RBP13.59□□□□□ -0.23
LINC02541-201ENST00000427157 PITPNM1O00562 1244 aa13.46□□□□□ -0.25
LINC02541-201ENST00000427157 ZNF692Q9BU19 519 aaPredicted RBP13.46□□□□□ -0.25
LINC02541-201ENST00000427157 SSUH2Q9Y2M2 353 aa13.45□□□□□ -0.26
LINC02541-201ENST00000427157 PIP4P2Q8N4L2 257 aa13.33□□□□□ -0.28
LINC02541-201ENST00000427157 SPDYE1Q8NFV5 336 aaPredicted RBP13.29□□□□□ -0.28
LINC02541-201ENST00000427157 FXR2P51116 673 aaKnown RBP eCLIP13.28□□□□□ -0.28
LINC02541-201ENST00000427157 PABPN1Q86U42 306 aaKnown RBP eCLIP13.28□□□□□ -0.28
LINC02541-201ENST00000427157 CLEC11AQ9Y240 323 aa13.26□□□□□ -0.29
LINC02541-201ENST00000427157 SPDYE4A6NLX3 237 aa13.15□□□□□ -0.3
LINC02541-201ENST00000427157 PRKAR2AP13861 404 aaKnown RBP13.1□□□□□ -0.31
LINC02541-201ENST00000427157 PRR29P0C7W0 189 aa13.07□□□□□ -0.32
LINC02541-201ENST00000427157 CHADLQ6NUI6 762 aa13.02□□□□□ -0.33
LINC02541-201ENST00000427157 HAX1O00165 279 aa13.01□□□□□ -0.33
LINC02541-201ENST00000427157 SP7Q8TDD2 431 aaPredicted RBP12.95□□□□□ -0.34
LINC02541-201ENST00000427157 STAG3Q9UJ98 1225 aa12.94□□□□□ -0.34
LINC02541-201ENST00000427157 EVX2Q03828 476 aa12.89□□□□□ -0.35
LINC02541-201ENST00000427157 PROM2Q8N271 834 aa12.89□□□□□ -0.35
LINC02541-201ENST00000427157 C19orf67A6NJJ6 358 aa12.84□□□□□ -0.35
LINC02541-201ENST00000427157 FARP1Q9Y4F1 1045 aaPredicted RBP12.83□□□□□ -0.36
LINC02541-201ENST00000427157 CREBZFQ9NS37 354 aa12.82□□□□□ -0.36
LINC02541-201ENST00000427157 FKBP8Q14318 412 aa12.73□□□□□ -0.37
LINC02541-201ENST00000427157 CD44P16070 742 aaKnown RBP12.7□□□□□ -0.38
LINC02541-201ENST00000427157 MNX1P50219 401 aaPredicted RBP12.64□□□□□ -0.39
LINC02541-201ENST00000427157 GABBR2O75899 941 aa12.6□□□□□ -0.39
LINC02541-201ENST00000427157 NPM1P06748 294 aaKnown RBP eCLIP12.56□□□□□ -0.4
LINC02541-201ENST00000427157 ZRANB1Q9UGI0 708 aa12.54□□□□□ -0.4
LINC02541-201ENST00000427157 ZNF579Q8NAF0 562 aaKnown RBP12.52□□□□□ -0.41
LINC02541-201ENST00000427157 MIER1Q8N108 512 aa12.51□□□□□ -0.41
LINC02541-201ENST00000427157 PAK3O75914 559 aaPredicted RBP12.47□□□□□ -0.41
LINC02541-201ENST00000427157 PLEKHG5O94827 1062 aa12.46□□□□□ -0.41
LINC02541-201ENST00000427157 PLCD3Q8N3E9 789 aa12.44□□□□□ -0.42
LINC02541-201ENST00000427157 CLCN6P51797 869 aa12.43□□□□□ -0.42
LINC02541-201ENST00000427157 PHF12Q96QT6 1004 aa12.41□□□□□ -0.42
LINC02541-201ENST00000427157 FBXO3Q9UK99 471 aa12.38□□□□□ -0.43
LINC02541-201ENST00000427157 TSPYL2Q9H2G4 693 aaPredicted RBP12.37□□□□□ -0.43
LINC02541-201ENST00000427157 GALR2O43603 387 aaPredicted RBP12.36□□□□□ -0.43
LINC02541-201ENST00000427157 POTEIP0CG38 1075 aa12.35□□□□□ -0.43
LINC02541-201ENST00000427157 RASEFQ8IZ41 740 aa12.33□□□□□ -0.44
LINC02541-201ENST00000427157 ZBTB47Q9UFB7 747 aaPredicted RBP12.32□□□□□ -0.44
LINC02541-201ENST00000427157 CCDC61Q9Y6R9 512 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms