Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 YPEL5P2-201ENST00000605553 359 ntBASIC10.26□□□□□ -0.77
SENP3Q9H4L4 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC10.26□□□□□ -0.77
SENP3Q9H4L4 HNF1A-AS1-205ENST00000619441 343 ntTSL 3 BASIC10.26□□□□□ -0.77
SENP3Q9H4L4 BBS12-203ENST00000542236 3431 ntAPPRIS P1 TSL 2 BASIC10.26□□□□□ -0.77
SENP3Q9H4L4 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC10.26□□□□□ -0.77
SENP3Q9H4L4 OTX2-201ENST00000339475 3001 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
SENP3Q9H4L4 RNF146-210ENST00000608991 2169 ntAPPRIS P3 TSL 4 BASIC10.26□□□□□ -0.77
SENP3Q9H4L4 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
SENP3Q9H4L4 AC104024.1-201ENST00000428142 2201 ntTSL 2 BASIC10.26□□□□□ -0.77
SENP3Q9H4L4 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
SENP3Q9H4L4 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
SENP3Q9H4L4 ATP10B-202ENST00000327245 7566 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
SENP3Q9H4L4 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
SENP3Q9H4L4 PHF2P2-202ENST00000444553 2865 ntBASIC10.25□□□□□ -0.77
SENP3Q9H4L4 TRIM49B-202ENST00000622138 2162 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
SENP3Q9H4L4 HSPG2-203ENST00000374695 14327 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
SENP3Q9H4L4 GCNT3-201ENST00000396065 4933 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
SENP3Q9H4L4 AP003486.1-201ENST00000525716 3994 ntBASIC10.25□□□□□ -0.77
SENP3Q9H4L4 SNORA26-201ENST00000391286 122 ntBASIC10.25□□□□□ -0.77
SENP3Q9H4L4 NDUFB4P4-201ENST00000404822 243 ntBASIC10.25□□□□□ -0.77
SENP3Q9H4L4 RNA5SP431-201ENST00000410312 120 ntBASIC10.25□□□□□ -0.77
SENP3Q9H4L4 RN7SKP229-201ENST00000410465 302 ntBASIC10.25□□□□□ -0.77
SENP3Q9H4L4 RN7SKP27-201ENST00000410684 333 ntBASIC10.25□□□□□ -0.77
SENP3Q9H4L4 AC000089.1-201ENST00000424559 801 ntBASIC10.25□□□□□ -0.77
SENP3Q9H4L4 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC10.25□□□□□ -0.77
SENP3Q9H4L4 AC097359.1-201ENST00000447946 463 ntBASIC10.25□□□□□ -0.77
SENP3Q9H4L4 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC10.25□□□□□ -0.77
SENP3Q9H4L4 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC10.25□□□□□ -0.77
SENP3Q9H4L4 AL161757.5-202ENST00000556696 570 ntTSL 3 BASIC10.25□□□□□ -0.77
SENP3Q9H4L4 AC019159.1-201ENST00000605094 187 ntBASIC10.25□□□□□ -0.77
SENP3Q9H4L4 RN7SL126P-201ENST00000616400 299 ntBASIC10.25□□□□□ -0.77
SENP3Q9H4L4 AC092329.4-204ENST00000639327 549 ntTSL 4 BASIC10.25□□□□□ -0.77
SENP3Q9H4L4 KIAA1024-201ENST00000305428 6732 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
SENP3Q9H4L4 AC091304.1-202ENST00000568624 3100 ntTSL 5 BASIC10.25□□□□□ -0.77
SENP3Q9H4L4 TMEM246-203ENST00000374851 5070 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
SENP3Q9H4L4 OR2F1-203ENST00000641412 4829 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
SENP3Q9H4L4 ZNF407-207ENST00000582337 5662 ntTSL 5 BASIC10.25□□□□□ -0.77
SENP3Q9H4L4 LINC02532-208ENST00000602621 2232 ntTSL 2 BASIC10.25□□□□□ -0.77
SENP3Q9H4L4 SLC25A24-202ENST00000370041 3404 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 AL049647.1-201ENST00000319682 1789 ntTSL 2 BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 NDUFS1-204ENST00000440274 2394 ntTSL 2 BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 SORBS1-204ENST00000361941 3940 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 AMOT-204ENST00000371962 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 PSMD6-AS2-201ENST00000472046 2456 ntTSL 2 BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 CFAP54-202ENST00000524981 9766 ntAPPRIS P2 TSL 5 BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 LINC01699-201ENST00000319701 259 ntTSL 2 BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 RNU6-170P-201ENST00000362832 104 ntBASIC10.24□□□□□ -0.77
SENP3Q9H4L4 RNU6-674P-201ENST00000363831 107 ntBASIC10.24□□□□□ -0.77
SENP3Q9H4L4 RNU6-712P-201ENST00000410558 100 ntBASIC10.24□□□□□ -0.77
SENP3Q9H4L4 AL049651.2-202ENST00000419734 412 ntTSL 5 BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 TOMM22P2-201ENST00000430735 237 ntBASIC10.24□□□□□ -0.77
SENP3Q9H4L4 AL353795.2-201ENST00000431804 425 ntTSL 2 BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 AC007969.2-201ENST00000441891 191 ntBASIC10.24□□□□□ -0.77
SENP3Q9H4L4 RN7SL83P-201ENST00000468131 297 ntBASIC10.24□□□□□ -0.77
SENP3Q9H4L4 KRBOX1-202ENST00000418176 2566 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 AC009163.7-201ENST00000621929 2557 ntBASIC10.24□□□□□ -0.77
SENP3Q9H4L4 AC015849.5-201ENST00000604907 5473 ntTSL 2 BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 SAR1A-202ENST00000373238 3227 ntAPPRIS P1 TSL 2 BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 NEDD4L-209ENST00000456986 8436 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 AC245060.6-201ENST00000624350 8420 ntBASIC10.24□□□□□ -0.77
SENP3Q9H4L4 NHEJ1-202ENST00000409720 1954 ntTSL 5 BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 ZFX-201ENST00000304543 2996 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 GABRA1-202ENST00000393943 4686 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 GJC1-202ENST00000426548 7640 ntAPPRIS P1 TSL 3 BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 AC011632.1-202ENST00000518128 2810 ntTSL 2 BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
SENP3Q9H4L4 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 UGT3A1-207ENST00000625798 3097 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 WDR87-202ENST00000447313 9009 ntAPPRIS ALT2 TSL 2 BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 SLC35F1-202ENST00000621341 4481 ntAPPRIS ALT2 TSL 5 BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 ABCA6-201ENST00000284425 5300 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 NPL-201ENST00000258317 2461 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 PLEKHA5-201ENST00000299275 4238 ntAPPRIS P3 TSL 1 (best) BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 RNU6-816P-201ENST00000390914 107 ntBASIC10.23□□□□□ -0.77
SENP3Q9H4L4 RNU6-1268P-201ENST00000391214 107 ntBASIC10.23□□□□□ -0.77
SENP3Q9H4L4 RNU6-1239P-201ENST00000391310 107 ntBASIC10.23□□□□□ -0.77
SENP3Q9H4L4 CYP4F32P-201ENST00000426492 504 ntBASIC10.23□□□□□ -0.77
SENP3Q9H4L4 AC244670.1-201ENST00000436879 112 ntBASIC10.23□□□□□ -0.77
SENP3Q9H4L4 AC026461.2-201ENST00000568608 244 ntTSL 5 BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 MIR4437-201ENST00000581331 60 ntBASIC10.23□□□□□ -0.77
SENP3Q9H4L4 U6.99-201ENST00000637524 83 ntBASIC10.23□□□□□ -0.77
SENP3Q9H4L4 CLCN5-204ENST00000376108 2660 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 BDNF-209ENST00000420794 4176 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 LIMD1-201ENST00000273317 11331 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 MAPK10-279ENST00000641157 2449 ntBASIC10.23□□□□□ -0.77
SENP3Q9H4L4 ACOT13-203ENST00000537591 4391 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
SENP3Q9H4L4 LINC01814-202ENST00000454224 8839 ntTSL 1 (best) BASIC10.22□□□□□ -0.77
SENP3Q9H4L4 BRDT-204ENST00000394530 3207 ntTSL 2 BASIC10.22□□□□□ -0.77
SENP3Q9H4L4 PCDH15-230ENST00000617051 7048 ntTSL 5 BASIC10.22□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms