Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 U3.31-201ENST00000408113 216 ntBASIC9.6□□□□□ -0.87
MSH5O43196 RN7SKP53-201ENST00000411337 315 ntBASIC9.6□□□□□ -0.87
MSH5O43196 AC022296.2-201ENST00000512424 202 ntBASIC9.6□□□□□ -0.87
MSH5O43196 RNU7-61P-201ENST00000515897 61 ntBASIC9.6□□□□□ -0.87
MSH5O43196 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC9.6□□□□□ -0.87
MSH5O43196 CR382285.1-202ENST00000604687 547 ntBASIC9.6□□□□□ -0.87
MSH5O43196 AC244196.1-201ENST00000620569 409 ntAPPRIS P1 BASIC9.6□□□□□ -0.87
MSH5O43196 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC9.6□□□□□ -0.87
MSH5O43196 USP37-203ENST00000415516 4516 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
MSH5O43196 AGBL1-205ENST00000635782 3201 ntAPPRIS P2 TSL 5 BASIC9.6□□□□□ -0.87
MSH5O43196 TNFRSF19-203ENST00000382263 4151 ntAPPRIS ALT2 TSL 1 (best) BASIC9.6□□□□□ -0.87
MSH5O43196 ZFP62-207ENST00000512132 4010 ntTSL 2 BASIC9.6□□□□□ -0.87
MSH5O43196 PROM1-219ENST00000539194 3884 ntAPPRIS ALT2 TSL 5 BASIC9.6□□□□□ -0.87
MSH5O43196 OXR1-206ENST00000449762 2621 ntTSL 1 (best) BASIC9.6□□□□□ -0.87
MSH5O43196 MBL2-201ENST00000373968 3569 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
MSH5O43196 TMOD2-203ENST00000539962 3000 ntTSL 2 BASIC9.6□□□□□ -0.87
MSH5O43196 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC9.6□□□□□ -0.87
MSH5O43196 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC9.6□□□□□ -0.87
MSH5O43196 ASH1L-202ENST00000392403 10979 ntAPPRIS P2 TSL 5 BASIC9.59□□□□□ -0.87
MSH5O43196 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC9.59□□□□□ -0.87
MSH5O43196 ERI2-215ENST00000569729 2646 ntTSL 2 BASIC9.59□□□□□ -0.87
MSH5O43196 ATR-201ENST00000350721 8249 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
MSH5O43196 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC9.59□□□□□ -0.87
MSH5O43196 FBXO40-201ENST00000338040 5929 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
MSH5O43196 SNORD14B-201ENST00000364533 90 ntBASIC9.59□□□□□ -0.87
MSH5O43196 SNORA29-201ENST00000384183 140 ntBASIC9.59□□□□□ -0.87
MSH5O43196 ALDH7A1P4-201ENST00000412255 178 ntBASIC9.59□□□□□ -0.87
MSH5O43196 RPL31P11-202ENST00000454082 372 ntBASIC9.59□□□□□ -0.87
MSH5O43196 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC9.59□□□□□ -0.87
MSH5O43196 SCARNA23-201ENST00000516060 130 ntBASIC9.59□□□□□ -0.87
MSH5O43196 CYCSP23-201ENST00000519781 313 ntBASIC9.59□□□□□ -0.87
MSH5O43196 OR5BK1P-201ENST00000550421 823 ntBASIC9.59□□□□□ -0.87
MSH5O43196 AC074050.1-201ENST00000563247 211 ntBASIC9.59□□□□□ -0.87
MSH5O43196 AL356056.3-201ENST00000605984 551 ntTSL 3 BASIC9.59□□□□□ -0.87
MSH5O43196 5S_rRNA.11-201ENST00000618635 84 ntBASIC9.59□□□□□ -0.87
MSH5O43196 CTAGE1-201ENST00000391403 4313 ntAPPRIS P2 BASIC9.59□□□□□ -0.87
MSH5O43196 NNT-201ENST00000264663 6483 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
MSH5O43196 SPA17-204ENST00000532692 4949 ntAPPRIS P1 TSL 1 (best) BASIC9.59□□□□□ -0.87
MSH5O43196 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC9.59□□□□□ -0.87
MSH5O43196 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC9.59□□□□□ -0.87
MSH5O43196 OR2A42-202ENST00000641810 4946 ntAPPRIS P1 BASIC9.59□□□□□ -0.87
MSH5O43196 CCDC66-203ENST00000394672 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC9.59□□□□□ -0.87
MSH5O43196 TRPM3-208ENST00000377105 5957 ntAPPRIS ALT2 TSL 5 BASIC9.59□□□□□ -0.87
MSH5O43196 PWAR1-201ENST00000624188 2414 ntBASIC9.58□□□□□ -0.88
MSH5O43196 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC9.58□□□□□ -0.88
MSH5O43196 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC9.58□□□□□ -0.88
MSH5O43196 TLK2-214ENST00000582809 3608 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
MSH5O43196 CTNNA1-244ENST00000627109 3831 ntTSL 5 BASIC9.58□□□□□ -0.88
MSH5O43196 AL590705.5-202ENST00000375204 3161 ntTSL 2 BASIC9.58□□□□□ -0.88
MSH5O43196 ZNF227-201ENST00000313040 3043 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
MSH5O43196 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
MSH5O43196 SNORD51-201ENST00000384320 80 ntBASIC9.58□□□□□ -0.88
MSH5O43196 TRBV25-1-202ENST00000390398 381 ntAPPRIS P1 BASIC9.58□□□□□ -0.88
MSH5O43196 RPL23AP17-201ENST00000401064 499 ntBASIC9.58□□□□□ -0.88
MSH5O43196 AL451046.2-201ENST00000403074 277 ntBASIC9.58□□□□□ -0.88
MSH5O43196 AL033519.1-201ENST00000407266 307 ntBASIC9.58□□□□□ -0.88
MSH5O43196 RNA5SP475-201ENST00000410568 110 ntBASIC9.58□□□□□ -0.88
MSH5O43196 AC096649.2-201ENST00000416186 393 ntBASIC9.58□□□□□ -0.88
MSH5O43196 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC9.58□□□□□ -0.88
MSH5O43196 AL390728.3-201ENST00000452704 270 ntBASIC9.58□□□□□ -0.88
MSH5O43196 RNA5SP57-201ENST00000459463 123 ntBASIC9.58□□□□□ -0.88
MSH5O43196 RN7SL502P-201ENST00000481857 290 ntBASIC9.58□□□□□ -0.88
MSH5O43196 RN7SL868P-201ENST00000485915 303 ntBASIC9.58□□□□□ -0.88
MSH5O43196 RNU2-12P-201ENST00000517216 168 ntBASIC9.58□□□□□ -0.88
MSH5O43196 AP004833.3-201ENST00000531893 322 ntBASIC9.58□□□□□ -0.88
MSH5O43196 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC9.58□□□□□ -0.88
MSH5O43196 AL135978.1-201ENST00000553618 1266 ntBASIC9.58□□□□□ -0.88
MSH5O43196 AC099778.2-201ENST00000610904 211 ntBASIC9.58□□□□□ -0.88
MSH5O43196 U7.3-201ENST00000616123 62 ntBASIC9.58□□□□□ -0.88
MSH5O43196 Six3os1_7.1-201ENST00000621512 201 ntBASIC9.58□□□□□ -0.88
MSH5O43196 5S_rRNA.13-201ENST00000622298 123 ntBASIC9.58□□□□□ -0.88
MSH5O43196 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC9.58□□□□□ -0.88
MSH5O43196 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC9.58□□□□□ -0.88
MSH5O43196 KIF4A-201ENST00000374403 4348 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
MSH5O43196 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC9.57□□□□□ -0.88
MSH5O43196 ELOVL5-203ENST00000370918 3081 ntTSL 2 BASIC9.57□□□□□ -0.88
MSH5O43196 LRRC31-201ENST00000264676 2355 ntAPPRIS ALT2 TSL 2 BASIC9.57□□□□□ -0.88
MSH5O43196 TCP11X2-202ENST00000453326 1747 ntAPPRIS P1 TSL 2 BASIC9.57□□□□□ -0.88
MSH5O43196 TCP11X1-201ENST00000597070 1747 ntTSL 2 BASIC9.57□□□□□ -0.88
MSH5O43196 MAVS-202ENST00000428216 11714 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
MSH5O43196 RASGRP3-202ENST00000403687 4807 ntAPPRIS P3 TSL 1 (best) BASIC9.57□□□□□ -0.88
MSH5O43196 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
MSH5O43196 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC9.57□□□□□ -0.88
MSH5O43196 STK4-207ENST00000499879 6161 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
MSH5O43196 MIR412-201ENST00000362142 91 ntBASIC9.57□□□□□ -0.88
MSH5O43196 RN7SKP187-201ENST00000365536 330 ntBASIC9.57□□□□□ -0.88
MSH5O43196 RNU6-409P-201ENST00000384114 104 ntBASIC9.57□□□□□ -0.88
MSH5O43196 SNORD116-22-201ENST00000384430 92 ntBASIC9.57□□□□□ -0.88
MSH5O43196 LDHAP5-201ENST00000394996 622 ntBASIC9.57□□□□□ -0.88
MSH5O43196 AL590762.2-201ENST00000395798 571 ntBASIC9.57□□□□□ -0.88
MSH5O43196 SUMO3-202ENST00000397893 520 ntTSL 2 BASIC9.57□□□□□ -0.88
MSH5O43196 AC244452.1-201ENST00000413798 141 ntBASIC9.57□□□□□ -0.88
MSH5O43196 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC9.57□□□□□ -0.88
MSH5O43196 RPS4XP2-201ENST00000458402 793 ntBASIC9.57□□□□□ -0.88
MSH5O43196 RPL21P6-201ENST00000479171 504 ntBASIC9.57□□□□□ -0.88
MSH5O43196 IGLVIV-59-201ENST00000520218 250 ntBASIC9.57□□□□□ -0.88
MSH5O43196 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC9.57□□□□□ -0.88
MSH5O43196 OTX2-203ENST00000554559 715 ntTSL 5 BASIC9.57□□□□□ -0.88
MSH5O43196 RN7SL835P-201ENST00000579920 262 ntBASIC9.57□□□□□ -0.88
MSH5O43196 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 7.4 ms