Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC5.72□□□□□ -1.49
USP48Q86UV5 RGS17P1-201ENST00000423358 553 ntBASIC5.72□□□□□ -1.49
USP48Q86UV5 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC5.72□□□□□ -1.49
USP48Q86UV5 OR51AB1P-201ENST00000429046 620 ntBASIC5.72□□□□□ -1.49
USP48Q86UV5 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC5.72□□□□□ -1.49
USP48Q86UV5 RPL23AP20-201ENST00000447965 421 ntBASIC5.72□□□□□ -1.49
USP48Q86UV5 RPL23AP24-201ENST00000458203 385 ntBASIC5.72□□□□□ -1.49
USP48Q86UV5 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC5.72□□□□□ -1.49
USP48Q86UV5 OR5H5P-201ENST00000503164 928 ntBASIC5.72□□□□□ -1.49
USP48Q86UV5 OR5BC1P-201ENST00000529327 739 ntBASIC5.72□□□□□ -1.49
USP48Q86UV5 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
USP48Q86UV5 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC5.72□□□□□ -1.49
USP48Q86UV5 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC5.72□□□□□ -1.49
USP48Q86UV5 AL445363.2-202ENST00000555361 435 ntTSL 3 BASIC5.72□□□□□ -1.49
USP48Q86UV5 AL355073.1-201ENST00000560296 517 ntTSL 4 BASIC5.72□□□□□ -1.49
USP48Q86UV5 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.72□□□□□ -1.49
USP48Q86UV5 AC060771.1-201ENST00000582031 164 ntBASIC5.72□□□□□ -1.49
USP48Q86UV5 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC5.72□□□□□ -1.49
USP48Q86UV5 AC068790.3-201ENST00000602988 553 ntBASIC5.72□□□□□ -1.49
USP48Q86UV5 ZFAND6-212ENST00000559775 1602 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
USP48Q86UV5 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
USP48Q86UV5 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP48Q86UV5 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
USP48Q86UV5 DCX-202ENST00000358070 9405 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP48Q86UV5 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP48Q86UV5 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
USP48Q86UV5 AC017104.4-201ENST00000636283 1592 ntBASIC5.72□□□□□ -1.49
USP48Q86UV5 AL442639.1-201ENST00000625030 1899 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 ORC4-202ENST00000392857 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
USP48Q86UV5 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP48Q86UV5 C8orf34-202ENST00000337103 3652 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.5
USP48Q86UV5 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
USP48Q86UV5 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.71□□□□□ -1.5
USP48Q86UV5 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.71□□□□□ -1.5
USP48Q86UV5 OR5J1P-201ENST00000313544 939 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
USP48Q86UV5 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
USP48Q86UV5 Y_RNA.11-201ENST00000362375 109 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 RNU6-534P-201ENST00000364877 106 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 Y_RNA.295-201ENST00000364918 102 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 SNORA20.2-201ENST00000383922 131 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 TRAV8-1-201ENST00000390430 473 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
USP48Q86UV5 AL591848.1-201ENST00000413092 322 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 AC004987.3-201ENST00000413879 771 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 OR51A5P-201ENST00000415429 942 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 HMGB3P20-201ENST00000417997 600 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC5.71□□□□□ -1.5
USP48Q86UV5 EZH2P1-201ENST00000431167 291 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 NUTF2P3-201ENST00000448540 384 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 AP000431.2-201ENST00000450653 790 ntTSL 2 BASIC5.71□□□□□ -1.5
USP48Q86UV5 AC069549.1-201ENST00000451584 499 ntTSL 3 BASIC5.71□□□□□ -1.5
USP48Q86UV5 ELOCP23-201ENST00000452014 332 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 AC104308.1-201ENST00000454621 333 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 MTCO2P29-201ENST00000465212 189 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 AC108751.2-201ENST00000469993 231 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 AC008883.2-201ENST00000505796 414 ntTSL 3 BASIC5.71□□□□□ -1.5
USP48Q86UV5 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC5.71□□□□□ -1.5
USP48Q86UV5 SNORD116-26-201ENST00000516006 96 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 SNORA31.9-201ENST00000516429 84 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 SNORA20.3-201ENST00000516880 132 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 AC107934.1-201ENST00000522215 217 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP48Q86UV5 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC5.71□□□□□ -1.5
USP48Q86UV5 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
USP48Q86UV5 RN7SL652P-201ENST00000577769 300 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 MIR4429-201ENST00000580105 73 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 UBE2L4-201ENST00000587688 464 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 AC004853.1-201ENST00000604902 698 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 AC023043.4-201ENST00000612081 449 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 AC114781.5-201ENST00000615297 108 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 AC104260.1-201ENST00000616660 539 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 GPR171-203ENST00000617554 960 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
USP48Q86UV5 AL158801.5-201ENST00000623123 465 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 AP005264.7-201ENST00000625003 745 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC5.71□□□□□ -1.5
USP48Q86UV5 AL596275.2-204ENST00000641628 552 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 AL596275.2-206ENST00000641957 626 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 ASNSP1-201ENST00000518311 1939 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
USP48Q86UV5 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC5.71□□□□□ -1.5
USP48Q86UV5 AC015813.6-201ENST00000624409 5808 ntBASIC5.71□□□□□ -1.5
USP48Q86UV5 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
USP48Q86UV5 AC009902.3-201ENST00000606235 2172 ntBASIC5.7□□□□□ -1.5
USP48Q86UV5 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
USP48Q86UV5 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
USP48Q86UV5 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC5.7□□□□□ -1.5
USP48Q86UV5 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
USP48Q86UV5 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.7□□□□□ -1.5
USP48Q86UV5 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC5.7□□□□□ -1.5
USP48Q86UV5 RNU4-1-201ENST00000363925 141 ntBASIC5.7□□□□□ -1.5
USP48Q86UV5 SNORA70C-201ENST00000384538 135 ntBASIC5.7□□□□□ -1.5
USP48Q86UV5 HIGD1C-201ENST00000398455 371 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
USP48Q86UV5 AP000580.1-201ENST00000404439 358 ntBASIC5.7□□□□□ -1.5
USP48Q86UV5 AL603766.1-201ENST00000407763 664 ntBASIC5.7□□□□□ -1.5
USP48Q86UV5 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC5.7□□□□□ -1.5
USP48Q86UV5 CYP4F29P-201ENST00000420685 446 ntBASIC5.7□□□□□ -1.5
USP48Q86UV5 AC245054.1-201ENST00000420944 258 ntBASIC5.7□□□□□ -1.5
USP48Q86UV5 AL645608.4-201ENST00000423619 154 ntBASIC5.7□□□□□ -1.5
USP48Q86UV5 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC5.7□□□□□ -1.5
USP48Q86UV5 MTND4LP16-201ENST00000440828 295 ntBASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms