Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
USP3Q9Y6I4 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC20.08■□□□□ 0.81
USP3Q9Y6I4 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
USP3Q9Y6I4 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.81
USP3Q9Y6I4 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.08■□□□□ 0.81
USP3Q9Y6I4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
USP3Q9Y6I4 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.08■□□□□ 0.81
USP3Q9Y6I4 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC20.08■□□□□ 0.81
USP3Q9Y6I4 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.08■□□□□ 0.81
USP3Q9Y6I4 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20.08■□□□□ 0.81
USP3Q9Y6I4 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
USP3Q9Y6I4 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.08■□□□□ 0.81
USP3Q9Y6I4 CYGB-204ENST00000589342 815 ntTSL 3 BASIC20.08■□□□□ 0.81
USP3Q9Y6I4 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.08■□□□□ 0.81
USP3Q9Y6I4 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
USP3Q9Y6I4 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP3Q9Y6I4 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP3Q9Y6I4 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP3Q9Y6I4 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP3Q9Y6I4 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP3Q9Y6I4 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
USP3Q9Y6I4 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
USP3Q9Y6I4 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.08■□□□□ 0.8
USP3Q9Y6I4 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 AL032819.2-201ENST00000624543 2162 ntBASIC20.07■□□□□ 0.8
USP3Q9Y6I4 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 EGLN1P1-201ENST00000531623 762 ntBASIC20.07■□□□□ 0.8
USP3Q9Y6I4 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.07■□□□□ 0.8
USP3Q9Y6I4 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC20.07■□□□□ 0.8
USP3Q9Y6I4 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP3Q9Y6I4 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP3Q9Y6I4 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
USP3Q9Y6I4 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP3Q9Y6I4 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.06■□□□□ 0.8
USP3Q9Y6I4 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP3Q9Y6I4 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC20.06■□□□□ 0.8
USP3Q9Y6I4 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC20.06■□□□□ 0.8
USP3Q9Y6I4 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
USP3Q9Y6I4 C2orf69P3-201ENST00000565542 1120 ntBASIC20.06■□□□□ 0.8
USP3Q9Y6I4 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC20.06■□□□□ 0.8
USP3Q9Y6I4 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC20.06■□□□□ 0.8
USP3Q9Y6I4 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
USP3Q9Y6I4 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP3Q9Y6I4 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
USP3Q9Y6I4 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP3Q9Y6I4 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USP3Q9Y6I4 TEX21P-204ENST00000641479 1693 ntBASIC20.06■□□□□ 0.8
USP3Q9Y6I4 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP3Q9Y6I4 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USP3Q9Y6I4 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 GDF5OS-201ENST00000374375 1734 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 CA15P1-201ENST00000481698 905 ntBASIC20.05■□□□□ 0.8
USP3Q9Y6I4 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 LINC01568-207ENST00000641790 1380 ntBASIC20.05■□□□□ 0.8
USP3Q9Y6I4 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
USP3Q9Y6I4 GAS2L1P1-201ENST00000420145 1480 ntBASIC20.05■□□□□ 0.8
USP3Q9Y6I4 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
USP3Q9Y6I4 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC20.04■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms