Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
VPS9D1Q9Y2B5 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.08■□□□□ 0.64
VPS9D1Q9Y2B5 FP475955.4-201ENST00000623131 1990 ntBASIC19.08■□□□□ 0.64
VPS9D1Q9Y2B5 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.08■□□□□ 0.64
VPS9D1Q9Y2B5 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC19.08■□□□□ 0.64
VPS9D1Q9Y2B5 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.08■□□□□ 0.64
VPS9D1Q9Y2B5 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 AL353807.1-201ENST00000427475 662 ntBASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 AC120057.1-201ENST00000483947 663 ntBASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 FXYD3-214ENST00000605677 633 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 AL161938.1-201ENST00000569833 2180 ntBASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
VPS9D1Q9Y2B5 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 ERCC2-203ENST00000391944 2334 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 FAM201B-201ENST00000458407 597 ntBASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
VPS9D1Q9Y2B5 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 GLRB-205ENST00000512619 728 ntTSL 3 BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 AL445675.2-201ENST00000620291 557 ntBASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 AC098818.2-201ENST00000564925 2320 ntBASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
VPS9D1Q9Y2B5 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 FEM1AP3-201ENST00000403722 1741 ntBASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 TNXA-203ENST00000507684 2038 ntBASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.04■□□□□ 0.64
VPS9D1Q9Y2B5 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms