Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC15.52■□□□□ 0.08
FOXA2Q9Y261 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
FOXA2Q9Y261 ANKRD18DP-204ENST00000455355 1975 ntBASIC15.52■□□□□ 0.07
FOXA2Q9Y261 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC15.52■□□□□ 0.07
FOXA2Q9Y261 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
FOXA2Q9Y261 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
FOXA2Q9Y261 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC15.52■□□□□ 0.07
FOXA2Q9Y261 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC15.52■□□□□ 0.07
FOXA2Q9Y261 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
FOXA2Q9Y261 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC15.52■□□□□ 0.07
FOXA2Q9Y261 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.07
FOXA2Q9Y261 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
FOXA2Q9Y261 AC006333.2-201ENST00000607957 2099 ntBASIC15.52■□□□□ 0.07
FOXA2Q9Y261 GOLGA6L3-201ENST00000507199 1679 ntBASIC15.51■□□□□ 0.07
FOXA2Q9Y261 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 AL049812.1-201ENST00000432563 2267 ntBASIC15.51■□□□□ 0.07
FOXA2Q9Y261 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 KRT18P29-201ENST00000397031 1267 ntBASIC15.51■□□□□ 0.07
FOXA2Q9Y261 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 YBX1P10-201ENST00000444752 975 ntBASIC15.51■□□□□ 0.07
FOXA2Q9Y261 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 AC073648.6-201ENST00000641589 218 ntBASIC15.51■□□□□ 0.07
FOXA2Q9Y261 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
FOXA2Q9Y261 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 AC104417.2-201ENST00000562989 1793 ntBASIC15.5■□□□□ 0.07
FOXA2Q9Y261 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 AC128676.1-201ENST00000454392 318 ntBASIC15.5■□□□□ 0.07
FOXA2Q9Y261 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 PNN-205ENST00000556530 601 ntTSL 2 BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 ITM2C-210ENST00000620962 501 ntBASIC15.5■□□□□ 0.07
FOXA2Q9Y261 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 KRT8P8-201ENST00000434750 1448 ntBASIC15.5■□□□□ 0.07
FOXA2Q9Y261 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC15.5■□□□□ 0.07
FOXA2Q9Y261 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA2Q9Y261 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA2Q9Y261 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA2Q9Y261 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC15.49■□□□□ 0.07
FOXA2Q9Y261 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
FOXA2Q9Y261 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
FOXA2Q9Y261 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA2Q9Y261 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA2Q9Y261 AP006587.1-201ENST00000534129 1502 ntBASIC15.49■□□□□ 0.07
FOXA2Q9Y261 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC15.49■□□□□ 0.07
FOXA2Q9Y261 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA2Q9Y261 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA2Q9Y261 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA2Q9Y261 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA2Q9Y261 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC15.49■□□□□ 0.07
FOXA2Q9Y261 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC15.49■□□□□ 0.07
FOXA2Q9Y261 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
FOXA2Q9Y261 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms