Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC29.13■■■□□ 2.25
COL17A1Q9UMD9 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
COL17A1Q9UMD9 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC29.12■■■□□ 2.25
COL17A1Q9UMD9 LSM5-204ENST00000409909 740 ntTSL 2 BASIC29.12■■■□□ 2.25
COL17A1Q9UMD9 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC29.12■■■□□ 2.25
COL17A1Q9UMD9 IGHV3-47-201ENST00000425060 335 ntBASIC29.12■■■□□ 2.25
COL17A1Q9UMD9 AC099336.1-202ENST00000602961 463 ntBASIC29.12■■■□□ 2.25
COL17A1Q9UMD9 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC29.12■■■□□ 2.25
COL17A1Q9UMD9 MIR7706-201ENST00000613747 67 ntBASIC29.12■■■□□ 2.25
COL17A1Q9UMD9 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC29.12■■■□□ 2.25
COL17A1Q9UMD9 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
COL17A1Q9UMD9 Z98882.1-201ENST00000622160 2253 ntBASIC29.12■■■□□ 2.25
COL17A1Q9UMD9 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
COL17A1Q9UMD9 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
COL17A1Q9UMD9 AC233702.3-201ENST00000578656 1387 ntBASIC29.12■■■□□ 2.25
COL17A1Q9UMD9 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC29.12■■■□□ 2.25
COL17A1Q9UMD9 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC29.12■■■□□ 2.25
COL17A1Q9UMD9 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 AL031284.1-201ENST00000419297 478 ntBASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 AL136038.4-201ENST00000603606 1261 ntBASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC29.11■■■□□ 2.25
COL17A1Q9UMD9 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 FICD-205ENST00000552758 603 ntTSL 2 BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 AL391807.1-203ENST00000604392 2365 ntBASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 AL157888.1-201ENST00000631930 593 ntBASIC29.1■■■□□ 2.25
COL17A1Q9UMD9 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
COL17A1Q9UMD9 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC29.09■■■□□ 2.25
COL17A1Q9UMD9 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
COL17A1Q9UMD9 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
COL17A1Q9UMD9 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC29.09■■■□□ 2.25
COL17A1Q9UMD9 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
COL17A1Q9UMD9 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC29.09■■■□□ 2.25
COL17A1Q9UMD9 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
COL17A1Q9UMD9 TERC-201ENST00000602385 541 ntBASIC29.09■■■□□ 2.25
COL17A1Q9UMD9 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
COL17A1Q9UMD9 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
COL17A1Q9UMD9 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC29.09■■■□□ 2.25
COL17A1Q9UMD9 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC29.08■■■□□ 2.25
COL17A1Q9UMD9 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC29.08■■■□□ 2.25
COL17A1Q9UMD9 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
COL17A1Q9UMD9 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC29.08■■■□□ 2.25
COL17A1Q9UMD9 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC29.08■■■□□ 2.25
COL17A1Q9UMD9 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
COL17A1Q9UMD9 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC29.08■■■□□ 2.25
COL17A1Q9UMD9 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
COL17A1Q9UMD9 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC29.08■■■□□ 2.25
COL17A1Q9UMD9 IGHV3OR16-7-201ENST00000604106 360 ntBASIC29.08■■■□□ 2.25
COL17A1Q9UMD9 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC29.08■■■□□ 2.25
COL17A1Q9UMD9 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
COL17A1Q9UMD9 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
COL17A1Q9UMD9 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
COL17A1Q9UMD9 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC29.07■■■□□ 2.24
COL17A1Q9UMD9 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC29.07■■■□□ 2.24
COL17A1Q9UMD9 UBC-206ENST00000538617 1303 ntTSL 5 BASIC29.07■■■□□ 2.24
COL17A1Q9UMD9 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
COL17A1Q9UMD9 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC29.07■■■□□ 2.24
COL17A1Q9UMD9 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC29.07■■■□□ 2.24
COL17A1Q9UMD9 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC29.07■■■□□ 2.24
COL17A1Q9UMD9 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
COL17A1Q9UMD9 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
COL17A1Q9UMD9 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
COL17A1Q9UMD9 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
COL17A1Q9UMD9 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC29.07■■■□□ 2.24
COL17A1Q9UMD9 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC29.07■■■□□ 2.24
COL17A1Q9UMD9 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
COL17A1Q9UMD9 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC29.07■■■□□ 2.24
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms