Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 SDHAP1-207ENST00000440850 2000 ntBASIC19.28■□□□□ 0.68
DKK3Q9UBP4 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
DKK3Q9UBP4 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC19.27■□□□□ 0.68
DKK3Q9UBP4 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.27■□□□□ 0.68
DKK3Q9UBP4 KRT8P11-201ENST00000409686 1436 ntBASIC19.27■□□□□ 0.68
DKK3Q9UBP4 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
DKK3Q9UBP4 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.27■□□□□ 0.68
DKK3Q9UBP4 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
DKK3Q9UBP4 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
DKK3Q9UBP4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
DKK3Q9UBP4 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
DKK3Q9UBP4 TSPY21P-201ENST00000433481 731 ntBASIC19.27■□□□□ 0.68
DKK3Q9UBP4 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.27■□□□□ 0.68
DKK3Q9UBP4 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.27■□□□□ 0.68
DKK3Q9UBP4 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
DKK3Q9UBP4 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.27■□□□□ 0.68
DKK3Q9UBP4 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC19.27■□□□□ 0.68
DKK3Q9UBP4 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC19.27■□□□□ 0.68
DKK3Q9UBP4 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
DKK3Q9UBP4 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.27■□□□□ 0.68
DKK3Q9UBP4 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
DKK3Q9UBP4 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
DKK3Q9UBP4 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 KRT18P22-201ENST00000402024 1347 ntBASIC19.26■□□□□ 0.67
DKK3Q9UBP4 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 SLC25A1P2-201ENST00000430693 912 ntBASIC19.26■□□□□ 0.67
DKK3Q9UBP4 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 CA15P1-201ENST00000481698 905 ntBASIC19.26■□□□□ 0.67
DKK3Q9UBP4 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
DKK3Q9UBP4 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC19.25■□□□□ 0.67
DKK3Q9UBP4 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
DKK3Q9UBP4 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
DKK3Q9UBP4 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
DKK3Q9UBP4 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC19.25■□□□□ 0.67
DKK3Q9UBP4 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC19.25■□□□□ 0.67
DKK3Q9UBP4 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
DKK3Q9UBP4 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.25■□□□□ 0.67
DKK3Q9UBP4 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.25■□□□□ 0.67
DKK3Q9UBP4 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
DKK3Q9UBP4 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.25■□□□□ 0.67
DKK3Q9UBP4 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
DKK3Q9UBP4 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.25■□□□□ 0.67
DKK3Q9UBP4 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
DKK3Q9UBP4 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
DKK3Q9UBP4 PCDHAC2-203ENST00000615316 3011 ntBASIC19.25■□□□□ 0.67
DKK3Q9UBP4 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
DKK3Q9UBP4 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms