Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM39Q9HCM9 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC19.02■□□□□ 0.64
TRIM39Q9HCM9 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.02■□□□□ 0.64
TRIM39Q9HCM9 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.02■□□□□ 0.64
TRIM39Q9HCM9 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM39Q9HCM9 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.02■□□□□ 0.64
TRIM39Q9HCM9 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
TRIM39Q9HCM9 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC19.02■□□□□ 0.64
TRIM39Q9HCM9 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.02■□□□□ 0.64
TRIM39Q9HCM9 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC19.02■□□□□ 0.64
TRIM39Q9HCM9 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM39Q9HCM9 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
TRIM39Q9HCM9 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.02■□□□□ 0.64
TRIM39Q9HCM9 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.02■□□□□ 0.64
TRIM39Q9HCM9 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM39Q9HCM9 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM39Q9HCM9 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRIM39Q9HCM9 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC19.02■□□□□ 0.63
TRIM39Q9HCM9 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.02■□□□□ 0.63
TRIM39Q9HCM9 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC19.02■□□□□ 0.63
TRIM39Q9HCM9 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.63
TRIM39Q9HCM9 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
TRIM39Q9HCM9 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 FAM207BP-201ENST00000447172 505 ntBASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 AC073912.3-201ENST00000624414 853 ntBASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRIM39Q9HCM9 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
TRIM39Q9HCM9 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM39Q9HCM9 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRIM39Q9HCM9 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRIM39Q9HCM9 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM39Q9HCM9 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRIM39Q9HCM9 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19■□□□□ 0.63
TRIM39Q9HCM9 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM39Q9HCM9 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRIM39Q9HCM9 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRIM39Q9HCM9 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19■□□□□ 0.63
TRIM39Q9HCM9 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19■□□□□ 0.63
TRIM39Q9HCM9 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19■□□□□ 0.63
TRIM39Q9HCM9 MMP23A-201ENST00000234610 1017 ntBASIC19■□□□□ 0.63
TRIM39Q9HCM9 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19■□□□□ 0.63
TRIM39Q9HCM9 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19■□□□□ 0.63
TRIM39Q9HCM9 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRIM39Q9HCM9 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19■□□□□ 0.63
TRIM39Q9HCM9 AP000525.1-201ENST00000608286 694 ntBASIC19■□□□□ 0.63
TRIM39Q9HCM9 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC19■□□□□ 0.63
TRIM39Q9HCM9 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
TRIM39Q9HCM9 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19■□□□□ 0.63
TRIM39Q9HCM9 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM39Q9HCM9 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19■□□□□ 0.63
TRIM39Q9HCM9 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM39Q9HCM9 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRIM39Q9HCM9 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19■□□□□ 0.63
TRIM39Q9HCM9 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC19■□□□□ 0.63
TRIM39Q9HCM9 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC19■□□□□ 0.63
TRIM39Q9HCM9 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 AC097488.1-201ENST00000507834 756 ntBASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 POLI-202ENST00000406285 2030 ntTSL 2 BASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 SDHAP1-207ENST00000440850 2000 ntBASIC18.99■□□□□ 0.63
TRIM39Q9HCM9 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms