Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIME1Q9H400 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC16.84■□□□□ 0.29
LIME1Q9H400 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC16.84■□□□□ 0.29
LIME1Q9H400 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC16.84■□□□□ 0.29
LIME1Q9H400 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC16.84■□□□□ 0.29
LIME1Q9H400 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIME1Q9H400 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIME1Q9H400 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIME1Q9H400 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIME1Q9H400 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC16.84■□□□□ 0.29
LIME1Q9H400 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
LIME1Q9H400 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIME1Q9H400 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIME1Q9H400 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIME1Q9H400 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIME1Q9H400 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIME1Q9H400 AC004980.1-204ENST00000429707 299 ntBASIC16.84■□□□□ 0.29
LIME1Q9H400 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.84■□□□□ 0.29
LIME1Q9H400 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC16.84■□□□□ 0.29
LIME1Q9H400 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.84■□□□□ 0.29
LIME1Q9H400 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC16.84■□□□□ 0.29
LIME1Q9H400 LINC01238-205ENST00000567549 1107 ntBASIC16.84■□□□□ 0.29
LIME1Q9H400 AC026271.3-201ENST00000571884 352 ntBASIC16.84■□□□□ 0.29
LIME1Q9H400 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
LIME1Q9H400 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIME1Q9H400 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIME1Q9H400 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
LIME1Q9H400 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
LIME1Q9H400 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC16.84■□□□□ 0.29
LIME1Q9H400 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIME1Q9H400 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
LIME1Q9H400 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC16.84■□□□□ 0.29
LIME1Q9H400 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
LIME1Q9H400 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
LIME1Q9H400 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.29
LIME1Q9H400 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
LIME1Q9H400 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
LIME1Q9H400 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC16.83■□□□□ 0.28
LIME1Q9H400 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC16.83■□□□□ 0.28
LIME1Q9H400 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIME1Q9H400 HIST1H2APS4-201ENST00000362070 348 ntBASIC16.83■□□□□ 0.28
LIME1Q9H400 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC16.83■□□□□ 0.28
LIME1Q9H400 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIME1Q9H400 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIME1Q9H400 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIME1Q9H400 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
LIME1Q9H400 H19-201ENST00000411754 1788 ntTSL 5 BASIC16.83■□□□□ 0.28
LIME1Q9H400 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIME1Q9H400 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC16.83■□□□□ 0.28
LIME1Q9H400 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC16.83■□□□□ 0.28
LIME1Q9H400 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC16.83■□□□□ 0.28
LIME1Q9H400 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIME1Q9H400 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC16.83■□□□□ 0.28
LIME1Q9H400 DGCR10-201ENST00000609839 495 ntBASIC16.83■□□□□ 0.28
LIME1Q9H400 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC16.83■□□□□ 0.28
LIME1Q9H400 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC16.83■□□□□ 0.28
LIME1Q9H400 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIME1Q9H400 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
LIME1Q9H400 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
LIME1Q9H400 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIME1Q9H400 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC16.82■□□□□ 0.28
LIME1Q9H400 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.82■□□□□ 0.28
LIME1Q9H400 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC16.82■□□□□ 0.28
LIME1Q9H400 DPP3P2-201ENST00000416030 1696 ntBASIC16.82■□□□□ 0.28
LIME1Q9H400 STK25-204ENST00000405585 1643 ntTSL 2 BASIC16.82■□□□□ 0.28
LIME1Q9H400 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
LIME1Q9H400 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC16.82■□□□□ 0.28
LIME1Q9H400 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC16.82■□□□□ 0.28
LIME1Q9H400 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIME1Q9H400 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
LIME1Q9H400 FAM8A6P-201ENST00000407496 1135 ntBASIC16.82■□□□□ 0.28
LIME1Q9H400 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
LIME1Q9H400 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC16.82■□□□□ 0.28
LIME1Q9H400 SAPCD2P2-201ENST00000431719 1174 ntBASIC16.82■□□□□ 0.28
LIME1Q9H400 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC16.82■□□□□ 0.28
LIME1Q9H400 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC16.82■□□□□ 0.28
LIME1Q9H400 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.82■□□□□ 0.28
LIME1Q9H400 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC16.82■□□□□ 0.28
LIME1Q9H400 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC16.82■□□□□ 0.28
LIME1Q9H400 POLI-202ENST00000406285 2030 ntTSL 2 BASIC16.82■□□□□ 0.28
LIME1Q9H400 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC16.82■□□□□ 0.28
LIME1Q9H400 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
LIME1Q9H400 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
LIME1Q9H400 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC16.81■□□□□ 0.28
LIME1Q9H400 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIME1Q9H400 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC16.81■□□□□ 0.28
LIME1Q9H400 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIME1Q9H400 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIME1Q9H400 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
LIME1Q9H400 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
LIME1Q9H400 RNF152P1-201ENST00000397754 604 ntBASIC16.81■□□□□ 0.28
LIME1Q9H400 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.81■□□□□ 0.28
LIME1Q9H400 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC16.81■□□□□ 0.28
LIME1Q9H400 YBX1P2-201ENST00000489612 999 ntBASIC16.81■□□□□ 0.28
LIME1Q9H400 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC16.81■□□□□ 0.28
LIME1Q9H400 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
LIME1Q9H400 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC16.81■□□□□ 0.28
LIME1Q9H400 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC16.81■□□□□ 0.28
LIME1Q9H400 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC16.81■□□□□ 0.28
LIME1Q9H400 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms